SCOPe 2.05: Domain d3mknc_: 3mkn C:

Lineage for d3mknc_ (3mkn C:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.70: Nucleoside hydrolase [53589] (1 superfamily)
   core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest

4. Superfamily c.70.1: Nucleoside hydrolase [53590] (2 families)

5. Family c.70.1.1: Nucleoside hydrolase [53591] (5 proteins)
   automatically mapped to Pfam PF01156

6. Protein Pyrimidine nucleoside hydrolase YeiK [102633] (1 species)

7. Species Escherichia coli [TaxId:562] [102634] (3 PDB entries)

8. Domain d3mknc_: 3mkn C: [181356]
   automated match to d1q8fa_
   complexed with ca, dnb

Details for d3mknc_

PDB Entry: 3mkn, 2 Å

PDB Description: Crystal structure of the E. coli pyrimidine nucleosidase YeiK bound to a competitive inhibitor

PDB Compounds: (C:) Putative uncharacterized protein YeiK

SCOPe Domain Sequences for d3mknc_:

Sequence, based on SEQRES records:

>d3mknc_ c.70.1.1 (C:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlv
pvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgv
plvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdat
cigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglv
eecvrgyik

Sequence, based on observed residues (ATOM records):

>d3mknc_ c.70.1.1 (C:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadtgldgpvfepltrqaesthavkyiidtlmasdgditlvpvgpl
sniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgvplvmm
gldltnqtvctpdviarmeraggpagelfsdimnftgpvhdatcigylinpdgiktqemy
vevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglveecvrgyik

Timeline for d3mknc_:

• d3mknc_ first appeared in SCOPe 2.01
  
• d3mknc_ appears in SCOPe 2.04
  
• d3mknc_ appears in SCOPe 2.06
  
• d3mknc_ appears in the current release, SCOPe 2.08