SCOPe 2.07: Domain d3mknb_: 3mkn B:

Lineage for d3mknb_ (3mkn B:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.70: Nucleoside hydrolase [53589] (1 superfamily)
   core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest

4. Superfamily c.70.1: Nucleoside hydrolase [53590] (2 families)

5. Family c.70.1.1: Nucleoside hydrolase [53591] (5 proteins)
   automatically mapped to Pfam PF01156

6. Protein Pyrimidine nucleoside hydrolase YeiK [102633] (1 species)

7. Species Escherichia coli [TaxId:562] [102634] (3 PDB entries)

8. Domain d3mknb_: 3mkn B: [181355]
   automated match to d1q8fa_
   complexed with ca, dnb

Details for d3mknb_

PDB Entry: 3mkn, 2 Å

PDB Description: Crystal structure of the E. coli pyrimidine nucleosidase YeiK bound to a competitive inhibitor

PDB Compounds: (B:) Putative uncharacterized protein YeiK

SCOPe Domain Sequences for d3mknb_:

Sequence, based on SEQRES records:

>d3mknb_ c.70.1.1 (B:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlv
pvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgv
plvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdat
cigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglv
eecvrgyi

Sequence, based on observed residues (ATOM records):

>d3mknb_ c.70.1.1 (B:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivagldgpvfepltrqaesthavkyiidtlmasdgditlvpvgplsn
iavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgvplvmmgl
dltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdatcigylin
pdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglveecvrgy
i

Timeline for d3mknb_:

• d3mknb_ first appeared in SCOPe 2.01
  
• d3mknb_ appears in SCOPe 2.06
  
• d3mknb_ appears in the current release, SCOPe 2.08