SCOPe 2.08: Domain d3mkmb_: 3mkm B:

Lineage for d3mkmb_ (3mkm B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.70: Nucleoside hydrolase [53589] (1 superfamily)
   core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest

4. Superfamily c.70.1: Nucleoside hydrolase [53590] (2 families)

5. Family c.70.1.1: Nucleoside hydrolase [53591] (5 proteins)
   automatically mapped to Pfam PF01156

6. Protein Pyrimidine nucleoside hydrolase YeiK [102633] (1 species)

7. Species Escherichia coli [TaxId:562] [102634] (3 PDB entries)

8. Domain d3mkmb_: 3mkm B: [181351]
   automated match to d1q8fa_
   complexed with ca

Details for d3mkmb_

PDB Entry: 3mkm, 2.2 Å

PDB Description: Crystal structure of the E. coli pyrimidine nucleoside hydrolase YeiK (Apo-form)

PDB Compounds: (B:) Putative uncharacterized protein YeiK

SCOPe Domain Sequences for d3mkmb_:

Sequence, based on SEQRES records:

>d3mkmb_ c.70.1.1 (B:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
ekrkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinv
pvyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditl
vpvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsg
vplvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhda
tcigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwgl
veecvrgyik

Sequence, based on observed residues (ATOM records):

>d3mkmb_ c.70.1.1 (B:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
ekrkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinv
pvyagmpqpimrqqivaddtgldgpvfepltrqaesthavkyiidtlmasdgditlvpvg
plsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgvplv
mmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfeaggpvhdatcigylin
pdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglveecvrgy
ik

Timeline for d3mkmb_:

• d3mkmb_ first appeared in SCOPe 2.01
  
• d3mkmb_ appears in SCOPe 2.07