SCOPe 2.08: Domain d3m8da_: 3m8d A:

Lineage for d3m8da_ (3m8d A:)

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.4: Transmembrane beta-barrels [56924] (7 superfamilies)
   not a true fold, gathers together transmembrane barrels of different (n,S)
   annotated by the SCOP(e) curators as 'not a true fold'

4. Superfamily f.4.3: Porins [56935] (5 families)

5. Family f.4.3.3: Ligand-gated protein channel [56948] (5 proteins)
   monomeric (22,24) barrel; ~150 N-terminal residues form a "plug" or "cork" subdomain

6. Protein Outer membrane cobalamin transporter BtuB [90129] (1 species)
   vitamin B12 receptor

7. Species Escherichia coli [TaxId:562] [90130] (12 PDB entries)

8. Domain d3m8da_: 3m8d A: [180960]
   automated match to d1ujwa_
   complexed with c8e, ca, cnc, mtn

Details for d3m8da_

PDB Entry: 3m8d, 2.44 Å

PDB Description: crystal structure of spin-labeled btub v10r1 with bound calcium and cyanocobalamin

PDB Compounds: (A:) Vitamin B12 transporter btuB

SCOPe Domain Sequences for d3m8da_:

Sequence, based on SEQRES records:

>d3m8da_ f.4.3.3 (A:) Outer membrane cobalamin transporter BtuB {Escherichia coli [TaxId: 562]}
tlvctanrfeqprstvlapttvvtrqdidrwqstsvndvlrrlpgvditqnggsgqlssi
firgtnashvlvlidgvrlnlagvsgsadlsqfpialvqrveyirgprsavygsdaiggv
vniittrdepgteisagwgsnsyqnydvstqqqlgdktrvtllgdyahthgydvvaygnt
gtqaqtdndgflsktlygalehnftdawsgfvrgygydnrtnydayyspgsplldtrkly
sqswdaglryngeliksqlitsyshskdynydphygrydssatldemkqytvqwannviv
ghgsigagvdwqkqtttpgtgyvedgydqrntgiyltglqqvgdftfegaarsddnsqfg
rhgtwqtsagwefiegyrfiasygtsykapnlgqlygfygnpnldpekskqwegafeglt
agvnwrisgyrndvsdlidyddhtlkyynegkarikgveatanfdtgplthtvsydyvda
rnaitdtpllrrakqqvkyqldwqlydfdwgityqylgtrydkdyssypyqtvkmggvsl
wdlavaypvtshltvrgkianlfdkdyetvygyqtagreytlsgsytf

Sequence, based on observed residues (ATOM records):

>d3m8da_ f.4.3.3 (A:) Outer membrane cobalamin transporter BtuB {Escherichia coli [TaxId: 562]}
tlvctanrfeqprstvlapttvvtrqdidrwqstsvndvlrrlpgvditqnggsgqlssi
firgtnashvlvlidgvrlnlagvsgsadlsqfpialvqrveyirgprsavygsdaiggv
vniittrdepgteisagwgsnsyqnydvstqqqlgdktrvtllgdyahthgydvvaygnt
gtqaqtdndgflsktlygalehnftdawsgfvrgygydnrtnydayyspgsplldtrkly
sqswdaglryngeliksqlitsyshskdynydphygrydssatldemkqytvqwannviv
ghgsigagvdwqkqtttpedgydqrntgiyltglqqvgdftfegaarsddnsqfgrhgtw
qtsagwefiegyrfiasygtsykapnlgqlygfygnpnldpekskqwegafegltagvnw
risgyrndvsdlidyddhtlkyynegkarikgveatanfdtgplthtvsydyvdarnait
dtpllrrakqqvkyqldwqlydfdwgityqylgtrydkdyssypyqtvkmggvslwdlav
aypvtshltvrgkianlfdkdyetvygyqtagreytlsgsytf

Timeline for d3m8da_:

• d3m8da_ first appeared in SCOPe 2.01
  
• d3m8da_ appears in SCOPe 2.07