SCOPe 2.08: Domain d3m5vb1: 3m5v B:1-298

Lineage for d3m5vb1 (3m5v B:1-298)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.0: automated matches [191319] (1 protein)
   not a true family

6. Protein automated matches [190115] (94 species)
   not a true protein

7. Species Campylobacter jejuni [TaxId:197] [189316] (3 PDB entries)

8. Domain d3m5vb1: 3m5v B:1-298 [180883]
   Other proteins in same PDB: d3m5vb2
   automated match to d1o5ka_
   complexed with cl, fmt, peg, so4

Details for d3m5vb1

PDB Entry: 3m5v, 1.8 Å

PDB Description: Crystal Structure of Dihydrodipicolinate Synthase from Campylobacter jejuni

PDB Compounds: (B:) Dihydrodipicolinate synthase

SCOPe Domain Sequences for d3m5vb1:

Sequence; same for both SEQRES and ATOM records:

>d3m5vb1 c.1.10.0 (B:1-298) automated matches {Campylobacter jejuni [TaxId: 197]}
mdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatltheehr
tcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqqgly
ehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvdlla
heprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkindel
yninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikgf

Timeline for d3m5vb1:

• d3m5vb1 first appeared in SCOPe 2.01, called d3m5vb_
  
• d3m5vb1 appears in SCOPe 2.07