SCOPe 2.04: Domain d3m1yd_: 3m1y D:

Lineage for d3m1yd_ (3m1y D:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.108: HAD-like [56783] (1 superfamily)
   3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

4. Superfamily c.108.1: HAD-like [56784] (26 families)
   usually contains an insertion (sub)domain after strand 1

5. Family c.108.1.0: automated matches [191369] (1 protein)
   not a true family

6. Protein automated matches [190447] (45 species)
   not a true protein

7. Species Helicobacter pylori [TaxId:210] [189290] (1 PDB entry)

8. Domain d3m1yd_: 3m1y D: [180728]
   automated match to d1f5sa_
   complexed with cl, mg

Details for d3m1yd_

PDB Entry: 3m1y, 2.4 Å

PDB Description: crystal structure of a phosphoserine phosphatase (serb) from helicobacter pylori

PDB Compounds: (D:) Phosphoserine phosphatase (SerB)

SCOPe Domain Sequences for d3m1yd_:

Sequence, based on SEQRES records:

>d3m1yd_ c.108.1.0 (D:) automated matches {Helicobacter pylori [TaxId: 210]}
slqklavfdfdstlvnaetieslarawgvfdevktitlkamngetdfhkslilrvsklkn
mplklakevceslplfegalelvsalkeknykvvcfsggfdlatnhyrdllhldaafsnt
livendalnglvtghmmfshskgemllvlqrllnisktntlvvgdgandlsmfkhahiki
afnakevlkqhathcinepdlalikpl

Sequence, based on observed residues (ATOM records):

>d3m1yd_ c.108.1.0 (D:) automated matches {Helicobacter pylori [TaxId: 210]}
slqklavfdfdstlvnaetieslarawgvfdevktitlkamnetdfhkslilrvsklknm
plklakevceslplfegalelvsalkeknykvvcfsggfdlatnhyrdllhldaafsntl
ivendalnglvtghmmfshskgemllvlqrllnisktntlvvgdgandlsmfkhahikia
fnakevlkqhathcinepdlalikpl

Timeline for d3m1yd_:

• d3m1yd_ first appeared in SCOPe 2.01
  
• d3m1yd_ appears in SCOPe 2.03
  
• d3m1yd_ appears in SCOPe 2.05
  
• d3m1yd_ appears in the current release, SCOPe 2.08, called d3m1yd1