Lineage for d3kdub1 (3kdu B:196-468)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008476Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2008477Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2008478Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 protein domains)
  6. 2008932Protein Peroxisome proliferator activated receptor alpha, PPAR-alpha [69109] (1 species)
  7. 2008933Species Human (Homo sapiens) [TaxId:9606] [69110] (16 PDB entries)
  8. 2008937Domain d3kdub1: 3kdu B:196-468 [179297]
    Other proteins in same PDB: d3kdub2
    automated match to d1i7ga_
    protein/DNA complex; complexed with nks

Details for d3kdub1

PDB Entry: 3kdu (more details), 2.07 Å

PDB Description: Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-((4-methylphenoxy)carbonyl)glycine
PDB Compounds: (B:) Peroxisome proliferator-activated receptor alpha

SCOPe Domain Sequences for d3kdub1:

Sequence, based on SEQRES records: (download)

>d3kdub1 a.123.1.1 (B:196-468) Peroxisome proliferator activated receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId: 9606]}
edsetadlkslakriyeaylknfnmnkvkarvilsgkasnnppfvihdmetlcmaektlv
aklvangiqnkeaevrifhccqctsvetvteltefakaipgfanldlndqvtllkygvye
aifamlssvmnkdgmlvaygngfitreflkslrkpfcdimepkfdfamkfnalelddsdi
slfvaaiiccgdrpgllnvghiekmqegivhvlrlhlqsnhpddiflfpkllqkmadlrq
lvtehaqlvqiikktesdaalhpllqeiyrdmy

Sequence, based on observed residues (ATOM records): (download)

>d3kdub1 a.123.1.1 (B:196-468) Peroxisome proliferator activated receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId: 9606]}
edsetadlkslakriyeaylknfnmnkvkarvilsgkannppfvihdmetlcmaektlvv
angiqnkeaevrifhccqctsvetvteltefakaipgfanldlndqvtllkygvyeaifa
mlssvmnkdgmlvaygngfitreflkslrkpfcdimepkfdfamkfnalelddsdislfv
aaiiccgdrpgllnvghiekmqegivhvlrlhlqsnhpddiflfpkllqkmadlrqlvte
haqlvqiikktesdaalhpllqeiyrdmy

SCOPe Domain Coordinates for d3kdub1:

Click to download the PDB-style file with coordinates for d3kdub1.
(The format of our PDB-style files is described here.)

Timeline for d3kdub1:

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Domains from same chain:
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d3kdub2
View in 3D
Domains from other chains:
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d3kdua_