SCOPe 2.01: Domain d3kb2b_: 3kb2 B:

Lineage for d3kb2b_ (3kb2 B:)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.1: Nucleotide and nucleoside kinases [52541] (21 proteins)
   parallel beta-sheet of 5 strands, order 23145

6. Protein automated matches [190087] (6 species)
   not a true protein

7. Species Bacillus subtilis [TaxId:1423] [189093] (1 PDB entry)

8. Domain d3kb2b_: 3kb2 B: [179230]
   automated match to d2axpa1
   complexed with g3d, mg

Details for d3kb2b_

PDB Entry: 3kb2, 2.2 Å

PDB Description: crystal structure of yorr protein in complex with phosphorylated gdp from bacillus subtilis, northeast structural genomics consortium target sr256

PDB Compounds: (B:) SPBc2 prophage-derived uncharacterized protein yorR

SCOPe Domain Sequences for d3kb2b_:

Sequence, based on SEQRES records:

>d3kb2b_ c.37.1.1 (B:) automated matches {Bacillus subtilis [TaxId: 1423]}
tliilegpdccfkstvaaklskelkypiikgssfelaksgneklfehfnkladednviid
rfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdeyie
gkdidsilelyrevmsnaglhtyswdtgqwssdeiakdiiflvelehhhhh

Sequence, based on observed residues (ATOM records):

>d3kb2b_ c.37.1.1 (B:) automated matches {Bacillus subtilis [TaxId: 1423]}
tliilegpdccfkstvaaklskelkypiikgssfelaksgneklfehfnkladednviid
rfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdeydi
dsilelyrevmsnaglhtyswdtgqwssdeiakdiiflvelehhhhh

Timeline for d3kb2b_:

• d3kb2b_ is new in SCOPe 2.01-stable
  
• d3kb2b_ appears in SCOPe 2.02
  
• d3kb2b_ appears in the current release, SCOPe 2.08, called d3kb2b1