Lineage for d3i8da_ (3i8d A:)

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 995076Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 995888Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 995889Family c.55.3.1: Ribonuclease H [53099] (5 proteins)
  6. 995890Protein BH0863-like Ribonuclease H [142490] (3 species)
    new class of RNase H
  7. 995891Species Bacillus halodurans [TaxId:86665] [142491] (12 PDB entries)
    Uniprot Q9KEI9 61-193! Uniprot Q9KEI9 62-193
    BH0863
  8. 995896Domain d3i8da_: 3i8d A: [178144]
    automated match to d1zbfa1
    protein/DNA complex; complexed with gol

Details for d3i8da_

PDB Entry: 3i8d (more details), 1.61 Å

PDB Description: the pairing geometry of the hydrophobic thymine analog 2,4- difluorotoluene in duplex dna as analyzed by x-ray crystallography
PDB Compounds: (A:) Ribonuclease H

SCOPe Domain Sequences for d3i8da_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3i8da_ c.55.3.1 (A:) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
eiiweslsvdvgsqgnpgiveykgvdtktgevlferepipigtnnmgeflaivhglrylk
ernsrkpiysnsqtaikwvkdkkakstlvrneetaliwklvdeaeewlnthtyetpilkw
qtdkwgeikady

SCOPe Domain Coordinates for d3i8da_:

Click to download the PDB-style file with coordinates for d3i8da_.
(The format of our PDB-style files is described here.)

Timeline for d3i8da_: