Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies) 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest |
Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) consists of one domain of this fold |
Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins) contains Pfam PF00929 |
Protein Exonuclease I [53132] (2 species) also includes an alpha+beta domain with SH3-like like motif and non-globular C-terminal all-alpha region |
Species Escherichia coli K-12 [TaxId:83333] [159630] (3 PDB entries) |
Domain d3hl8a_: 3hl8 A: [177663] automated match to d1fxxa_ protein/DNA complex; complexed with bbp, dms, edo, mg |
PDB Entry: 3hl8 (more details), 1.55 Å
SCOPe Domain Sequences for d3hl8a_:
Sequence, based on SEQRES records: (download)
>d3hl8a_ c.55.3.5 (A:) Exonuclease I {Escherichia coli K-12 [TaxId: 83333]} kqqstflfhdyetfgthpaldrpaqfaairtdsefnvigepevfyckpaddylpqpgavl itgitpqearakgeneaafaarihslftvpktcilgynnvrfddevtrnifyrnfydpya wswqhdnsrwdlldvmracyalrpeginwpenddglpsfrlehltkangiehsnahdama dvyatiamaklvktrqprlfdylfthrnkhklmalidvpqmkplvhvsgmfgawrgntsw vaplawhpenrnavimvdlagdisplleldsdtlrerlytaktdlgdnaavpvklvhink cpvlaqantlrpedadrlginrqhcldnlkilrenpqvrekvvaifaeaepftpsdnvda qlyngffsdadraamkivleteprnlpalditfvdkriekllfnyrarnfpgtldyaeqq rwlehrrqvftpeflqgyadelqmlvqqyaddkekvallkalwqyadeiv
>d3hl8a_ c.55.3.5 (A:) Exonuclease I {Escherichia coli K-12 [TaxId: 83333]} kqqstflfhdyetfgthpaldrpaqfaairtdsefnvigepevfyckpaddylpqpgavl itgitpqearakgeneaafaarihslftvpktcilgynnvrfddevtrnifyrnfydpya wswqhdnsrwdlldvmracyalrpeginwpenddglpsfrlehltkangiehsdamadvy atiamaklvktrqprlfdylfthrnkhklmalidvpqmkplvhvsgmfgawrgntswvap lawhpenrnavimvdlagdisplleldsdtlrerlytanaavpvklvhinkcpvlaqant lrpedadrlginrqhcldnlkilrenpqvrekvvaifaepsdnvdaqlyngffsdadraa mkivleteprnlpalditfvdkriekllfnyrarnfpgtldyaeqqrwlehrrqvftpef lqgyadelqmlvqqyaddkekvallkalwqyadeiv
Timeline for d3hl8a_: