SCOPe 2.08: Domain d3h5ya_: 3h5y A:

Lineage for d3h5ya_ (3h5y A:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)

6. Protein Viral RNA polymerase [56695] (17 species)

7. Species Norwalk virus [TaxId:11983] [103400] (8 PDB entries)

8. Domain d3h5ya_: 3h5y A: [177206]
   automated match to d1sh0b_
   protein/RNA complex; complexed with ctp, gol, mn
   missing some secondary structures that made up less than one-third of the common domain

Details for d3h5ya_

PDB Entry: 3h5y, 1.77 Å

PDB Description: norovirus polymerase+primer/template+ctp complex at 6 mm mncl2

PDB Compounds: (A:) RNA dependent RNA polymerase

SCOPe Domain Sequences for d3h5ya_:

Sequence, based on SEQRES records:

>d3h5ya_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
kgtycgapilgpgsapklstktkfwrsstaplppgtyepaylggkdprvkggpslqqvmr
dqlkpfteprgkppkpsvleaakktiinvleqtidppdkwsfaqacasldkttssghphh
mrkndcwngesftgkladqaskanlmfeegknmtpvytgalkdelvktdkiygkikkrll
wgsdlatmircarafgglmdelkthcvtlpirvgmnmnedgpiiferhsryryhydadys
rwdstqqravlaaaleimvkfssephlaqvvaedllspsvvdvgdftisineglpsgvpc
tsqwnsiahwlltlcalsevtnlspdiiqanslfsfygddeivstdikldpekltaklke
yglkptrpdktegplvisedlngltflrrtvtrdpagwfgkleqssilrqmywtrgpnhe
dpsetmiphsqrpiqlmsllgeaalhgpafyskisklviaelkeggmdfyvprqepmfrw
mrfs

Sequence, based on observed residues (ATOM records):

>d3h5ya_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
kgtycgapilgpgsapklstktkfwrsstaplppgtyepaylggkdprvkggpslqqvmr
dqlkpfteprgkppkpsvleaakktiinvleqtidppdkwsfaqacasldkttssghphh
mrkndcwngesftgkladqaskanlmfeegknmtpvytgalkdelvktdkiygkikkrll
wgsdlatmircarafgglmdelkthcvtlpirvgmnmnedgpiiferhsryryhydadys
rwdstqqravlaaaleimvkfssephlaqvvaedllspsvvdvgdftisineglpsgvpc
tsqwnsiahwlltlcalsevtnlspdiiqanslfsfygddeivstdikldpekltaklke
yglkptrpplvisedlngltflrrtvtrdpagwfgkleqssilrqmywtrgpnhedpset
miphsqrpiqlmsllgeaalhgpafyskisklviaeldfyvprqepmfrwmrfs

Timeline for d3h5ya_:

• d3h5ya_ first appeared in SCOPe 2.01
  
• d3h5ya_ appears in SCOPe 2.07