SCOPe 2.04: Domain d3gdmb_: 3gdm B:

Lineage for d3gdmb_ (3gdm B:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families)

5. Family c.1.2.3: Decarboxylase [51375] (4 proteins)

6. Protein automated matches [190130] (11 species)
   not a true protein

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188935] (5 PDB entries)

8. Domain d3gdmb_: 3gdm B: [176543]
   automated match to d1dqwa_
   mutant

Details for d3gdmb_

PDB Entry: 3gdm, 1.6 Å

PDB Description: crystal structure of the k93r mutant of the orotidine 5'-monophosphate decarboxylase from saccharomyces cerevisiae

PDB Compounds: (B:) orotidine 5'-phosphate decarboxylase

SCOPe Domain Sequences for d3gdmb_:

Sequence, based on SEQRES records:

>d3gdmb_ c.1.2.3 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
katykeraathpspvaaklfnimhekqtnlcasldvrttkellelvealgpkicllkthv
diltdfsmegtvkplkalsakynfllfedrrfadigntvklqysagvyriaewaditnah
gvvgpgivsglkqaaeevtkeprgllmlaelsckgslatgeytkgtvdiaksdkdfvigf
iaqrdmggrdegydwlimtpgvglddkgdalgqqyrtvddvvstgsdiiivgrglfakgr
dakvegeryrkagweaylrr

Sequence, based on observed residues (ATOM records):

>d3gdmb_ c.1.2.3 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
katykeraathpspvaaklfnimhekqtnlcasldvrttkellelvealgpkicllkthv
diltdfsmegtvkplkalsakynfllfedrrfadigntvklqysagvyriaewaditnah
gvvgpgivsglkqaaeevtkeprgllmlaelsckgslatgeytkgtvdiaksdkdfvigf
iaqrdmggrdegydwlimtpgvglrtvddvvstgsdiiivgrglfakgrdakvegeryrk
agweaylrr

Timeline for d3gdmb_:

• d3gdmb_ first appeared in SCOPe 2.01
  
• d3gdmb_ appears in SCOPe 2.03
  
• d3gdmb_ appears in SCOPe 2.05
  
• d3gdmb_ appears in the current release, SCOPe 2.08