SCOPe 2.06: Domain d3fypd_: 3fyp D:

Lineage for d3fypd_ (3fyp D:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.4: Class I DAHP synthetase [51599] (3 proteins)

6. Protein automated matches [190083] (9 species)
   not a true protein

7. Species Neisseria meningitidis [TaxId:491] [188836] (2 PDB entries)

8. Domain d3fypd_: 3fyp D: [176150]
   automated match to d1d9ea_
   complexed with cl, gol, mn, na, pep; mutant

Details for d3fypd_

PDB Entry: 3fyp, 1.85 Å

PDB Description: crystal structure of the quadruple mutant (n23c/c246s/d247e/p249a) of 3-deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from neisseria meningitidis

PDB Compounds: (D:) 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase

SCOPe Domain Sequences for d3fypd_:

Sequence, based on SEQRES records:

>d3fypd_ c.1.10.4 (D:) automated matches {Neisseria meningitidis [TaxId: 491]}
mdikinditlgnnspfvlfggicvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtd
lvvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlg
fgvmkqtcgnlpvifdvthslqtrdagsaasggrraqaldlalagmatrlaglfleshpd
pklaksegasalplhlledflirikalddliksqpil

Sequence, based on observed residues (ATOM records):

>d3fypd_ c.1.10.4 (D:) automated matches {Neisseria meningitidis [TaxId: 491]}
mdikinditlgnnspfvlfggicvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssiyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtdlv
vamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlgfg
vmkqtcgnlpvifdvthslqtgrraqaldlalagmatrlaglfleshpalplhlledfli
rikalddliksqpil

Timeline for d3fypd_:

• d3fypd_ first appeared in SCOPe 2.01
  
• d3fypd_ appears in SCOPe 2.05
  
• d3fypd_ appears in SCOPe 2.07
  
• d3fypd_ appears in the current release, SCOPe 2.08