Lineage for d3f4nb_ (3f4n B:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2826025Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2840720Superfamily c.1.24: Pyridoxine 5'-phosphate synthase [63892] (2 families) (S)
  5. 2840721Family c.1.24.1: Pyridoxine 5'-phosphate synthase [63893] (2 proteins)
    automatically mapped to Pfam PF03740
  6. 2840756Protein automated matches [190984] (2 species)
    not a true protein
  7. 2840762Species Yersinia pestis [TaxId:632] [188678] (1 PDB entry)
  8. 2840764Domain d3f4nb_: 3f4n B: [175463]
    Other proteins in same PDB: d3f4nc2
    automated match to d1ho1a_
    complexed with pxp, so4

Details for d3f4nb_

PDB Entry: 3f4n (more details), 2.4 Å

PDB Description: Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein PdxJ from Yersinia pestis
PDB Compounds: (B:) pyridoxine 5'-phosphate synthase

SCOPe Domain Sequences for d3f4nb_:

Sequence, based on SEQRES records: (download)

>d3f4nb_ c.1.24.1 (B:) automated matches {Yersinia pestis [TaxId: 632]}
adlllgvnidhiatlrnargtiypdpvqaafiaeqagadgitvhlredrrhitdrdvril
rqtiqtrmnlemavtdemvdiacdikphfcclvpekrqevtteggldvagqvdkmtlavg
rladvgilvslfidadfrqidaavaagapyieihtgayadastvlerqaelmriakaaty
aagkglkvnaghgltyhnvqpiaalpemhelnighaiigqavmtglaaavtdmkvlmrea
rr

Sequence, based on observed residues (ATOM records): (download)

>d3f4nb_ c.1.24.1 (B:) automated matches {Yersinia pestis [TaxId: 632]}
adlllgvnidhiatlrnargtiypdpvqaafiaeqagadgitvhlredrrhitdrdvril
rqtiqtrmnlemavtdemvdiacdikphfcclvpekrqeggldvagqvdkmtlavgrlad
vgilvslfidadfrqidaavaagapyieihtgayadastvlerqaelmriakaatyaagk
glkvnaghgltyhnvqpiaalpemhelnighaiigqavmtglaaavtdmkvlmrearr

SCOPe Domain Coordinates for d3f4nb_:

Click to download the PDB-style file with coordinates for d3f4nb_.
(The format of our PDB-style files is described here.)

Timeline for d3f4nb_: