SCOPe 2.05: Domain d3ed8d_: 3ed8 D:

Lineage for d3ed8d_ (3ed8 D:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.22: GFP-like [54510] (1 superfamily)
   beta-sheet folds into a barrel (n=11, S=14) around the central helix

4. Superfamily d.22.1: GFP-like [54511] (3 families)

5. Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)

6. Protein automated matches [190406] (16 species)
   not a true protein

7. Species Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (40 PDB entries)

8. Domain d3ed8d_: 3ed8 D: [174860]
   automated match to d1qyoa_

Details for d3ed8d_

PDB Entry: 3ed8, 2.7 Å

PDB Description: application of the superfolder yfp bimolecular fluorescence complementation for studying protein-protein interactions in vitro

PDB Compounds: (D:) yellow fluorescence protein

SCOPe Domain Sequences for d3ed8d_:

Sequence, based on SEQRES records:

>d3ed8d_ d.22.1.1 (D:) automated matches {Jellyfish (Aequorea victoria) [TaxId: 6100]}
skgeelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwptlv
ttlgyglqcfarypdhmkqhdffksampegyvqertisfkddgkyktravvkfegdtlvn
rielkgtdfkedgnilghkleynfnshnvyitatrgtaaarpackipndlkqkvmnhdkq
kngikanftvrhnvedgsvqladhyqqntpigdgpvllpdnhylsyqtvlskdpnekrdh
mvllefvtaagitl

Sequence, based on observed residues (ATOM records):

>d3ed8d_ d.22.1.1 (D:) automated matches {Jellyfish (Aequorea victoria) [TaxId: 6100]}
skgeelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwptlv
ttlgyglqcfarypdhmkqhdffksampegyvqertisfkddgkyktravvkfegdtlvn
rielkgtdfkedgnilghkleynfnshnvyitatrgtkngikanftvrhnvedgsvqlad
hyqqntpigdgpvllpdnhylsyqtvlskdpnekrdhmvllefvtaagitl

Timeline for d3ed8d_:

• d3ed8d_ first appeared in SCOPe 2.01
  
• d3ed8d_ appears in SCOPe 2.04
  
• d3ed8d_ appears in SCOPe 2.06
  
• d3ed8d_ appears in the current release, SCOPe 2.08