Lineage for d3ed8d_ (3ed8 D:)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2939772Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 2939773Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 2939774Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)
  6. 2940226Protein automated matches [190406] (19 species)
    not a true protein
  7. 2940415Species Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (58 PDB entries)
  8. 2940491Domain d3ed8d_: 3ed8 D: [174860]
    automated match to d1qyoa_

Details for d3ed8d_

PDB Entry: 3ed8 (more details), 2.7 Å

PDB Description: application of the superfolder yfp bimolecular fluorescence complementation for studying protein-protein interactions in vitro
PDB Compounds: (D:) yellow fluorescence protein

SCOPe Domain Sequences for d3ed8d_:

Sequence, based on SEQRES records: (download)

>d3ed8d_ d.22.1.1 (D:) automated matches {Jellyfish (Aequorea victoria) [TaxId: 6100]}
skgeelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwptlv
ttlgyglqcfarypdhmkqhdffksampegyvqertisfkddgkyktravvkfegdtlvn
rielkgtdfkedgnilghkleynfnshnvyitatrgtaaarpackipndlkqkvmnhdkq
kngikanftvrhnvedgsvqladhyqqntpigdgpvllpdnhylsyqtvlskdpnekrdh
mvllefvtaagitl

Sequence, based on observed residues (ATOM records): (download)

>d3ed8d_ d.22.1.1 (D:) automated matches {Jellyfish (Aequorea victoria) [TaxId: 6100]}
skgeelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwptlv
ttlgyglqcfarypdhmkqhdffksampegyvqertisfkddgkyktravvkfegdtlvn
rielkgtdfkedgnilghkleynfnshnvyitatrgtkngikanftvrhnvedgsvqlad
hyqqntpigdgpvllpdnhylsyqtvlskdpnekrdhmvllefvtaagitl

SCOPe Domain Coordinates for d3ed8d_:

Click to download the PDB-style file with coordinates for d3ed8d_.
(The format of our PDB-style files is described here.)

Timeline for d3ed8d_: