SCOPe 2.08: Domain d3dqqa1: 3dqq A:1-420

Lineage for d3dqqa1 (3dqq A:1-420)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.146: YgbK-like [142763] (1 superfamily)
   consists of two domains with partial topological similarity to the P-loop kinases but without the P-loop motif; the domain association results in the formation of a single mixed beta-sheet of 15 strands

4. Superfamily c.146.1: YgbK-like [142764] (2 families)

5. Family c.146.1.1: YgbK-like [142765] (2 proteins)
   Pfam PF07005; DUF1537; the B-fam model-covered region is non-compact in structure and distributed between the two domains

6. Protein automated matches [190941] (1 species)
   not a true protein

7. Species Salmonella typhimurium [TaxId:90371] [188501] (1 PDB entry)

8. Domain d3dqqa1: 3dqq A:1-420 [174185]
   Other proteins in same PDB: d3dqqa2
   automated match to d1yzya1

Details for d3dqqa1

PDB Entry: 3dqq, 2.7 Å

PDB Description: The crystal structure of the putative tRNA synthase from Salmonella typhimurium LT2

PDB Compounds: (A:) Putative tRNA synthase

SCOPe Domain Sequences for d3dqqa1:

Sequence, based on SEQRES records:

>d3dqqa1 c.146.1.1 (A:1-420) automated matches {Salmonella typhimurium [TaxId: 90371]}
mlkigviaddftgatdiasflvengmptvqindvptgtqpegcdavvislktrscpaqea
ikqslaalvwlkkqgcqqvyfkycstfdstaegnigpvtdalmvaldtsftvispalpvn
grtvyqgylfvmnhllaesgmrhhpinpmtdsylprlmeaqaqgrcgvipaqtldegvaa
traalsrlqqegyryavldalnerhleiqgevlrdaplvtggsglamglarqwakhgvsq
arsagyplsgravvlsgscsqmtnqqvafyrqhaptrdvdvarclssetreayaealaqw
vlsqdselapmisatastqalaaiqqqygateashavealfsllaarlaeggitrfivag
getsgvvtqslgitgfhigpcispgvpwvnalhapvslalksgnfgdesffiraqrefqv

Sequence, based on observed residues (ATOM records):

>d3dqqa1 c.146.1.1 (A:1-420) automated matches {Salmonella typhimurium [TaxId: 90371]}
mlkigviaddftgatdiasflvengmptvqindvptgtqpegcdavvislktrscpaqea
ikqslaalvwlkkqgcqqvyfkycstfdstaegnigpvtdalmvaldtsftvispalpvn
grtvyqgylfvmnhllaesgmrhhpinpmtdsylprlmeaqaqgrcgvipaqtldegvaa
traalsrlqqegyryavldalnerhleiqgevlrdaplvtggsglamglarqwakhgvsr
sagyplsgravvlsgscsqmtnqqvafyrqhaptrdvdvarclssetreayaealaqwvl
sqdselapmisatastqalaaiqqqygateashavealfsllaarlaeggitrfivagge
tsgvvtqslgitgfhigpcispgvpwvnalhapvslalksgnfgdesffiraqrefqv

Timeline for d3dqqa1:

• d3dqqa1 first appeared in SCOPe 2.01, called d3dqqa_
  
• d3dqqa1 appears in SCOPe 2.07