SCOPe 2.01: Domain d3doda_: 3dod A:

Lineage for d3doda_ (3dod A:)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.0: automated matches [191328] (1 protein)
   not a true family

6. Protein automated matches [190151] (25 species)
   not a true protein

7. Species Bacillus subtilis [TaxId:1423] [188928] (1 PDB entry)

8. Domain d3doda_: 3dod A: [174094]
   automated match to d1s0aa_
   complexed with plp

Details for d3doda_

PDB Entry: 3dod, 1.9 Å

PDB Description: Crystal Structure of PLP Bound 7,8-Diaminopelargonic Acid Synthase in Bacillus subtilis

PDB Compounds: (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

SCOPe Domain Sequences for d3doda_:

Sequence, based on SEQRES records:

>d3doda_ c.67.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}
hdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhghrk
kelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameialk
mafqywknigkpekqkfiamkngyhgdtigavsvgsielfhhvygplmfesykapipyvy
rsesgdpdecrdqclrelaqlleehheeiaalsiesmvqgasgmivmpegylagvrelct
tydvlmivdevatgfgrtgkmfacehenvqpdlmaagkgitggylpiavtfatediykaf
yddyenlktffhghsytgnqlgcavalenlalfeseniveqvaekskklhfllqdlhalp
hvgdirqlgfmcgaelvrsketkepypadrrigykvslkmrelgmltrplgdviaflppl
astaeelsemvaimkqaihevtsled

Sequence, based on observed residues (ATOM records):

>d3doda_ c.67.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}
hdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhghrk
kelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameialk
mafqywknigkpekqkfiamksykapipyvyrsesgdpdecrdqclrelaqlleehheei
aalsiesmvqgasgmivmpegylagvrelcttydvlmivdevatgfgrtgkmfacehenv
qpdlmaagkgitggylpiavtfatediykafyddyenlktffhghsytgnqlgcavalen
lalfeseniveqvaekskklhfllqdlhalphvgdirqlgfmcgaelvrsketkepypad
rrigykvslkmrelgmltrplgdviaflpplastaeelsemvaimkqaihevtsled

Timeline for d3doda_:

• d3doda_ is new in SCOPe 2.01-stable
  
• d3doda_ appears in SCOPe 2.02
  
• d3doda_ appears in the current release, SCOPe 2.08