Lineage for d3doda_ (3dod A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2132229Family c.67.1.0: automated matches [191328] (1 protein)
    not a true family
  6. 2132230Protein automated matches [190151] (121 species)
    not a true protein
  7. 2132320Species Bacillus subtilis [TaxId:1423] [188928] (1 PDB entry)
  8. 2132321Domain d3doda_: 3dod A: [174094]
    automated match to d1s0aa_
    complexed with plp

Details for d3doda_

PDB Entry: 3dod (more details), 1.9 Å

PDB Description: Crystal Structure of PLP Bound 7,8-Diaminopelargonic Acid Synthase in Bacillus subtilis
PDB Compounds: (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

SCOPe Domain Sequences for d3doda_:

Sequence, based on SEQRES records: (download)

>d3doda_ c.67.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}
hdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhghrk
kelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameialk
mafqywknigkpekqkfiamkngyhgdtigavsvgsielfhhvygplmfesykapipyvy
rsesgdpdecrdqclrelaqlleehheeiaalsiesmvqgasgmivmpegylagvrelct
tydvlmivdevatgfgrtgkmfacehenvqpdlmaagkgitggylpiavtfatediykaf
yddyenlktffhghsytgnqlgcavalenlalfeseniveqvaekskklhfllqdlhalp
hvgdirqlgfmcgaelvrsketkepypadrrigykvslkmrelgmltrplgdviaflppl
astaeelsemvaimkqaihevtsled

Sequence, based on observed residues (ATOM records): (download)

>d3doda_ c.67.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}
hdliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhghrk
kelddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameialk
mafqywknigkpekqkfiamksykapipyvyrsesgdpdecrdqclrelaqlleehheei
aalsiesmvqgasgmivmpegylagvrelcttydvlmivdevatgfgrtgkmfacehenv
qpdlmaagkgitggylpiavtfatediykafyddyenlktffhghsytgnqlgcavalen
lalfeseniveqvaekskklhfllqdlhalphvgdirqlgfmcgaelvrsketkepypad
rrigykvslkmrelgmltrplgdviaflpplastaeelsemvaimkqaihevtsled

SCOPe Domain Coordinates for d3doda_:

Click to download the PDB-style file with coordinates for d3doda_.
(The format of our PDB-style files is described here.)

Timeline for d3doda_: