Lineage for d3dm6b_ (3dm6 B:)

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1130027Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 1130028Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. 1131149Family b.50.1.2: Pepsin-like [50646] (11 proteins)
    duplication: consists of two similar barrel domains
    N-terminal: barrel, partly opened; n*=6, S*=10
  6. 1131671Protein automated matches [190156] (4 species)
    not a true protein
  7. 1131696Species Human (Homo sapiens) [TaxId:9606] [187237] (35 PDB entries)
  8. 1131739Domain d3dm6b_: 3dm6 B: [174054]
    automated match to d1fkna_
    complexed with 757, ipa

Details for d3dm6b_

PDB Entry: 3dm6 (more details), 2.6 Å

PDB Description: Beta-secretase 1 complexed with statine-based inhibitor
PDB Compounds: (B:) Beta-secretase 1

SCOPe Domain Sequences for d3dm6b_:

Sequence, based on SEQRES records: (download)

>d3dm6b_ b.50.1.2 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
sfvemvdnlrgksgqgyyvemtvgsppqtlnilvdtgssnfavgaaphpflhryyqrqls
styrdlrkgvyvpytqgkwegelgtdlvsiphgpnvtvraniaaitesdkffingsnweg
ilglayaeiarpddslepffdslvkqthvpnlfslqlcgagfplnqsevlasvggsmiig
gidhslytgslwytpirrewyyeviivrveingqdlkmdckeynydksivdsgttnlrlp
kkvfeaavksikaasstekfpdgfwlgeqlvcwqagttpwnifpvislylmgevtnqsfr
itilpqqylrpvedvatsqddcykfaisqsstgtvmgavimegfyvvfdrarkrigfavs
achvhdefrtaavegpfvtldmedcgyn

Sequence, based on observed residues (ATOM records): (download)

>d3dm6b_ b.50.1.2 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
sfvemvdnlrgksgqgyyvemtvgsppqtlnilvdtgssnfavgaaphpflhryyqrqls
styrdlrkgvyvpytqgkwegelgtdlvsiphgpnvtvraniaaitesdkffingsnweg
ilglayaeiarpddslepffdslvkqthvpnlfslqlcgaggsmiiggidhslytgslwy
tpirrewyyeviivrveingqdlkmdckeynydksivdsgttnlrlpkkvfeaavksika
asstekfpdgfwlgeqlvcwqagttpwnifpvislylmgevtnqsfritilpqqylrpve
sqddcykfaisqsstgtvmgavimegfyvvfdrarkrigfavsachvhdefrtaavegpf
vtldcgyn

SCOPe Domain Coordinates for d3dm6b_:

Click to download the PDB-style file with coordinates for d3dm6b_.
(The format of our PDB-style files is described here.)

Timeline for d3dm6b_: