SCOPe 2.08: Domain d2vmyb_: 2vmy B:

Lineage for d2vmyb_ (2vmy B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.4: GABA-aminotransferase-like [53417] (17 proteins)
   formerly omega-Aminoacid:pyruvate aminotransferase-like

6. Protein Serine hydroxymethyltransferase [53429] (7 species)

7. Species Bacillus stearothermophilus [TaxId:1422] [75272] (39 PDB entries)

8. Domain d2vmyb_: 2vmy B: [168726]
   automated match to d1kkja_
   complexed with ffo, gly, mrd, plp

Details for d2vmyb_

PDB Entry: 2vmy, 2.7 Å

PDB Description: crystal structure of f351gbsshmt in complex with gly and fthf

PDB Compounds: (B:) serine hydroxymethyltransferase

SCOPe Domain Sequences for d2vmyb_:

Sequence; same for both SEQRES and ATOM records:

>d2vmyb_ c.67.1.4 (B:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
mkylpqqdpqvfaaieqerkrqhakieliasenfvsravmeaqgsvltnkyaegypgrry
yggceyvdiveelarerakqlfgaehanvqphsgaqanmavyftvlehgdtvlgmnlshg
ghlthgspvnfsgvqynfvaygvdpethvidyddvrekarlhrpklivaaasaypriidf
akfreiadevgaylmvdmahiaglvaaglhpnpvpyahfvtttthktlrgprggmilcqe
qfakqidkaifpgiqggplmhviaakavafgealqddfkayakrvvdnakrlasalqneg
ftlvsggtdnhlllvdlrpqqltgktaekvldevgitvnkntipydpespgvtsgirigt
aavttrgfgleemdeiaaiiglvlknvgseqaleearqrvaaltd

Timeline for d2vmyb_:

• d2vmyb_ first appeared in SCOPe 2.01
  
• d2vmyb_ appears in SCOPe 2.07