SCOPe 2.08: Domain d2rgkd_: 2rgk D:

Lineage for d2rgkd_ (2rgk D:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
   multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

4. Superfamily a.102.1: Six-hairpin glycosidases [48208] (10 families)

5. Family a.102.1.3: N-acylglucosamine (NAG) epimerase [48222] (3 proteins)
   automatically mapped to Pfam PF07221

6. Protein Putative NAG isomerase YihS [140788] (2 species)

7. Species Escherichia coli [TaxId:562] [188589] (1 PDB entry)

8. Domain d2rgkd_: 2rgk D: [168121]
   automated match to d2afaa1
   complexed with epe

Details for d2rgkd_

PDB Entry: 2rgk, 2.5 Å

PDB Description: Functional annotation of Escherichia coli yihS-encoded protein

PDB Compounds: (D:) Uncharacterized sugar isomerase yihS

SCOPe Domain Sequences for d2rgkd_:

Sequence, based on SEQRES records:

>d2rgkd_ a.102.1.3 (D:) Putative NAG isomerase YihS {Escherichia coli [TaxId: 562]}
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttkvwdgkqdiyhllhclvipriplapgmapavaaglldinak

Sequence, based on observed residues (ATOM records):

>d2rgkd_ a.102.1.3 (D:) Putative NAG isomerase YihS {Escherichia coli [TaxId: 562]}
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttgkqdiyhllhclvipriplapgmapavaaglldinak

Timeline for d2rgkd_:

• d2rgkd_ first appeared in SCOPe 2.01
  
• d2rgkd_ appears in SCOPe 2.07