SCOPe 2.03: Domain d2pynb_: 2pyn B:

Lineage for d2pynb_ (2pyn B:)

1. Root: SCOPe 2.03

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.50: Acid proteases [50629] (1 superfamily)
   barrel, closed; n=6, S=10, complex topology

4. Superfamily b.50.1: Acid proteases [50630] (4 families)

5. Family b.50.1.1: Retroviral protease (retropepsin) [50631] (9 proteins)
   dimer of identical mono-domain chains, each containing (6,10) barrel

6. Protein Human immunodeficiency virus type 1 protease [50632] (8 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [50633] (421 PDB entries)
   Uniprot P35963 57-155 ! Uniprot P04587 69-167 ! Uniprot P03366 69-167 ! Uniprot P03367 69-167 ! Uniprot P03368 69-167

8. Domain d2pynb_: 2pyn B: [167346]
   automated match to d1odya_
   complexed with 1un; mutant

Details for d2pynb_

PDB Entry: 2pyn, 1.85 Å

PDB Description: hiv-1 pr mutant in complex with nelfinavir

PDB Compounds: (B:) protease retropepsin

SCOPe Domain Sequences for d2pynb_:

Sequence; same for both SEQRES and ATOM records:

>d2pynb_ b.50.1.1 (B:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}
pqitlwqrplvtikiggqlkealldtgadntvleemslpgawkpkmiggiggfikvrqyd
qilieicghkvigtvlvgptpvniigrnlltqigctlnf

Timeline for d2pynb_:

• d2pynb_ first appeared in SCOPe 2.01
  
• d2pynb_ appears in SCOPe 2.02
  
• d2pynb_ appears in SCOPe 2.04
  
• d2pynb_ appears in the current release, SCOPe 2.08