Lineage for d2nxil_ (2nxi L:)

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 968086Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 972170Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 972881Family c.1.10.4: Class I DAHP synthetase [51599] (3 proteins)
  6. 972958Protein 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) [51602] (4 species)
  7. 972959Species Aquifex aeolicus [TaxId:63363] [63922] (32 PDB entries)
  8. 973053Domain d2nxil_: 2nxi L: [166438]
    automated match to d1fwna_
    complexed with pep, po4

Details for d2nxil_

PDB Entry: 2nxi (more details), 2.3 Å

PDB Description: structural and mechanistic changes along an engineered path from metallo to non-metallo kdo8p synthase.
PDB Compounds: (L:) 2-dehydro-3-deoxyphosphooctonate aldolase

SCOPe Domain Sequences for d2nxil_:

Sequence, based on SEQRES records: (download)

>d2nxil_ c.1.10.4 (L:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
kflviagmnaieseelllkvgeeikrlsekfkevefvfkssfdkanrssihsfrghgley
gvkalrkvkeefglkittdiheswqaepvaevadiiqipaflcrqtdlllaaaktgravn
vkkgqflapwdtknvveklkfggakeiyltergttfgynnlvvdfrslpimkqwakviyd
athsvqlpgglgdksggmrefifpliraavavgcdgvfmethpepekalsdastqlplsq
legiieaileirevaskyyeti

Sequence, based on observed residues (ATOM records): (download)

>d2nxil_ c.1.10.4 (L:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
kflviagmnaieseelllkvgeeikrlsekfkevefvfkssfdkanrssihsfrghgley
gvkalrkvkeefglkittdiheswqaepvaevadiiqipaflcrqtdlllaaaktgravn
vkkgqflapwdtknvveklkfggakeiyltergttfgynnlvvdfrslpimkqwakviyd
athsvqlpgggmrefifpliraavavgcdgvfmethpepekalsdastqlplsqlegiie
aileirevaskyyeti

SCOPe Domain Coordinates for d2nxil_:

Click to download the PDB-style file with coordinates for d2nxil_.
(The format of our PDB-style files is described here.)

Timeline for d2nxil_: