SCOPe 2.05: Domain d2cybb_: 2cyb B:

Lineage for d2cybb_ (2cyb B:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families)

5. Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 proteins)
   contains a conserved all-alpha subdomain at the C-terminal extension

6. Protein automated matches [190581] (8 species)
   not a true protein

7. Species Archaeoglobus fulgidus [TaxId:2234] [187585] (1 PDB entry)

8. Domain d2cybb_: 2cyb B: [163511]
   automated match to d1j1ua_
   protein/RNA complex; complexed with tyr

Details for d2cybb_

PDB Entry: 2cyb, 1.8 Å

PDB Description: Crystal structure of Tyrosyl-tRNA Synthetase complexed with L-tyrosine from Archaeoglobus fulgidus

PDB Compounds: (B:) Tyrosyl-tRNA synthetase

SCOPe Domain Sequences for d2cybb_:

Sequence, based on SEQRES records:

>d2cybb_ c.26.1.1 (B:) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}
mditeklrlitrnaeevvteeelrqlietkekprayvgyepsgeihlghmmtvqklmdlq
eagfeiivlladihaylnekgtfeeiaevadynkkvfialgldesrakfvlgseyqlsrd
yvldvlkmarittlnrarrsmdevsrrkedpmvsqmiyplmqaldiahlgvdlavggidq
rkihmlarenlprlgysspvclhtpilvgldgqkmssskgnyisvrdppeeverkirkay
cpagvveenpildiakyhilprfgkivverdakfggdveyasfeelaedfksgqlhpldl
kiavakylnmlledarkrlg

Sequence, based on observed residues (ATOM records):

>d2cybb_ c.26.1.1 (B:) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}
mditeklrlitrnaeevvteeelrqlietkekprayvgyepsgeihlghmmtvqklmdlq
eagfeiivlladihaylnekgtfeeiaevadynkkvfialgldesrakfvlgseyqlsrd
yvldvlkmarittlnrarrsmdevsrrkedpmvsqmiyplmqaldiahlgvdlavggidq
rkihmlarenlprlgysspvclhtpilvgldgqkmssskgnyisvrdppeeverkirkay
cpagvveenpildiakyhilprfgkivverdagdveyasfeelaedfksgqlhpldlkia
vakylnmlledarkrlg

Timeline for d2cybb_:

• d2cybb_ first appeared in SCOPe 2.01
  
• d2cybb_ appears in SCOPe 2.04
  
• d2cybb_ appears in SCOPe 2.06
  
• d2cybb_ appears in the current release, SCOPe 2.08