Lineage for d1zkmd1 (1zkm D:1-244)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2149982Fold c.111: Activating enzymes of the ubiquitin-like proteins [69571] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest
  4. 2149983Superfamily c.111.1: Activating enzymes of the ubiquitin-like proteins [69572] (3 families) (S)
    transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins
    the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds
  5. 2150058Family c.111.1.0: automated matches [191511] (1 protein)
    not a true family
  6. 2150059Protein automated matches [190855] (2 species)
    not a true protein
  7. 2150063Species Escherichia coli [TaxId:562] [188186] (2 PDB entries)
  8. 2150071Domain d1zkmd1: 1zkm D:1-244 [162499]
    Other proteins in same PDB: d1zkmd2
    automated match to d1jw9b_
    complexed with zn

Details for d1zkmd1

PDB Entry: 1zkm (more details), 2.95 Å

PDB Description: Structural Analysis of Escherichia Coli ThiF
PDB Compounds: (D:) Adenylyltransferase thiF

SCOPe Domain Sequences for d1zkmd1:

Sequence, based on SEQRES records: (download)

>d1zkmd1 c.111.1.0 (D:1-244) automated matches {Escherichia coli [TaxId: 562]}
mndrdfmrysrqillddialdgqqklldsqvliiglgglgtpaalylagagvgtlvladd
ddvhlsnlqrqilfttedidrpksqvsqqrltqlnpdiqltalqqrltgealkdavarad
vvldctdnmatrqeinaacvalntplitasavgfggqlmvltppweqgcyrclwpdnqep
erncrtagvvgpvvgvmgtlqaleaikllsgietpagelrlfdgkssqwrslalrrasgc
pvcg

Sequence, based on observed residues (ATOM records): (download)

>d1zkmd1 c.111.1.0 (D:1-244) automated matches {Escherichia coli [TaxId: 562]}
mndrdfmrysrqillddialdgqqklldsqvliiglgglgtpaalylagagvgtlvladd
ddvhlsnlqrqilfttedidrpksqvsqqrltqlnpdiqltalqqrltgealkdavarad
vvldctdnmatrqeinaacvalntplitasavgfggqlmvltppweqgcyrclwpdnagv
vgpvvgvmgtlqaleaikllsgietpagelrlfdgkssqwrslalrrasgcpvcg

SCOPe Domain Coordinates for d1zkmd1:

Click to download the PDB-style file with coordinates for d1zkmd1.
(The format of our PDB-style files is described here.)

Timeline for d1zkmd1: