SCOPe 2.08: Domain d1yqwr_: 1yqw R:

Lineage for d1yqwr_ (1yqw R:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
   3 domains: (1) all-alpha; (2&3) alpha+beta

4. Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families)

5. Family e.18.1.1: Nickel-iron hydrogenase, large subunit [56763] (2 proteins)

6. Protein automated matches [190109] (8 species)
   not a true protein

7. Species Desulfovibrio fructosovorans [TaxId:878] [188150] (12 PDB entries)

8. Domain d1yqwr_: 1yqw R: [162283]
   Other proteins in same PDB: d1yqwa_, d1yqwb_, d1yqwc_
   automated match to d1e3db_
   complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4

Details for d1yqwr_

PDB Entry: 1yqw, 1.83 Å

PDB Description: structure of the oxidized unready form of ni-fe hydrogenase

PDB Compounds: (R:) Periplasmic [NiFe] hydrogenase Large subunit

SCOPe Domain Sequences for d1yqwr_:

Sequence; same for both SEQRES and ATOM records:

>d1yqwr_ e.18.1.1 (R:) automated matches {Desulfovibrio fructosovorans [TaxId: 878]}
kptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprda
qhftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhlha
ldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayf
lgghkayylppevnliatahylealhmqvkaasamailggknphtqftvvggcsnyqglt
kdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspsk
hlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytkldd
kdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgr
taargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwir
ikgkkidnfqlvvpatwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpci
acgvh

Timeline for d1yqwr_:

• d1yqwr_ first appeared in SCOPe 2.01
  
• d1yqwr_ appears in SCOPe 2.07