SCOPe 2.05: Domain d1vbmb_: 1vbm B:

Lineage for d1vbmb_ (1vbm B:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families)

5. Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 proteins)
   contains a conserved all-alpha subdomain at the C-terminal extension

6. Protein automated matches [190581] (8 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [188048] (3 PDB entries)

8. Domain d1vbmb_: 1vbm B: [161843]
   automated match to d1tyae_
   protein/RNA complex; complexed with so4, ysa

Details for d1vbmb_

PDB Entry: 1vbm, 2.7 Å

PDB Description: Crystal structure of the Escherichia coli tyrosyl-tRNA synthetase complexed with Tyr-AMS

PDB Compounds: (B:) Tyrosyl-tRNA synthetase

SCOPe Domain Sequences for d1vbmb_:

Sequence; same for both SEQRES and ATOM records:

>d1vbmb_ c.26.1.1 (B:) automated matches {Escherichia coli [TaxId: 562]}
nlikqlqerglvaqvtdeealaerlaqgpialycgfdptadslhlghlvpllclkrfqqa
ghkpvalvggatgligdpsfkaaerklnteetvqewvdkirkqvapfldfdcgensaiaa
nnydwfgnmnvltflrdigkhfsvnqminkeavkqrlnredqgisftefsynllqgydfa
clnkqygvvlqiggsdqwgnitsgidltrrlhqnqvfgltvplitkadgtkfgkteggav
wldpkktspykfyqfwintadadvyrflkfftfmsieeinaleeedknsgkapraqyvla
eqvtrlvhgeeglqaakr

Timeline for d1vbmb_:

• d1vbmb_ first appeared in SCOPe 2.01
  
• d1vbmb_ appears in SCOPe 2.04
  
• d1vbmb_ appears in SCOPe 2.06
  
• d1vbmb_ appears in the current release, SCOPe 2.08