Lineage for Protein: Pre-mRNA splicing factor 8, Prp8 / Spp42

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families) (S)
    consists of one domain of this fold
  5. Family c.55.3.14: Prp8 beta-finger domain-like [159638] (1 protein)
    automatically mapped to Pfam PF12134
  6. Protein Pre-mRNA splicing factor 8, Prp8 / Spp42 [159639] (4 species)

Species:

  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [159641] (5 PDB entries)
    Uniprot P33334 1833-2087! Uniprot P33334 1835-2087
    1. Domains for 3e66:
      1. Domain d3e66a1: 3e66 A:1833-2087 [158032]
      2. Domain d3e66b_: 3e66 B: [158033]
        automated match to d3e66a1
    2. Domain for 3e9o:
    3. Domains for 3e9p:
      1. Domain d3e9pa_: 3e9p A: [158070]
        automated match to d3e66a1
      2. Domain d3e9pb_: 3e9p B: [158071]
        automated match to d3e66a1
    4. Domain for 4ilg:
    5. Domain for 4ilh:
  2. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [234880] (138 PDB entries)
    1. Domain for 3sbt:
    2. Domain for 4i43:
    3. Domains for 4ilj:
      1. Domain d4ilja1: 4ilj A:1836-2086 [234881]
        Other proteins in same PDB: d4ilja2, d4iljb2
        automated match to d3e9la1
        mutant
      2. Domain d4iljb1: 4ilj B:1836-2086 [234882]
        Other proteins in same PDB: d4ilja2, d4iljb2
        automated match to d3e9la1
        mutant
    4. Domain for 5qy1:
    5. Domain for 5qy2:
    6. Domain for 5qy3:
    7. Domain for 5qy4:
    8. Domain for 5qy5:
    9. Domain for 5qy6:
    10. Domain for 5qy7:
    11. Domain for 5qy8:
    12. Domain for 5qy9:
    13. Domain for 5qya:
    14. Domain for 5qyb:
    15. Domain for 5qyc:
    16. Domain for 5qyd:
    17. Domain for 5qye:
    18. Domain for 5qyf:
    19. Domain for 5qyg:
    20. Domain for 5qyh:
    21. Domain for 5qyi:
    22. Domain for 5qyj:
    23. Domain for 5qyk:
    24. Domain for 5qyl:
    25. Domain for 5qym:
    26. Domain for 5qyn:
    27. Domain for 5qyo:
    28. Domain for 5qyp:
    29. Domain for 5qyq:
    30. Domain for 5qyr:
    31. Domain for 5qys:
    32. Domain for 5qyt:
    33. Domain for 5qyu:
    34. Domain for 5qyv:
    35. Domain for 5qyw:
    36. Domain for 5qyx:
    37. Domain for 5qyy:
    38. Domain for 5qyz:
    39. Domain for 5qz0:
    40. Domain for 5qz1:
    41. Domain for 5qz2:
    42. Domain for 5qz3:
    43. Domain for 5qz4:
    44. Domain for 5qz5:
    45. Domain for 5qz6:
    46. Domain for 5qz7:
    47. Domain for 5qz8:
    48. Domain for 5qz9:
    49. Domain for 5qza:
    50. Domain for 5qzb:
    51. Domain for 5qzc:
    52. Domain for 5qzd:
    53. Domain for 5qze:
    54. Domain for 5qzf:
    55. Domain for 5qzg:
    56. Domain for 5qzh:
    57. Domain for 5qzi:
    58. Domain for 5qzj:
    59. Domain for 5qzk:
    60. Domain for 5qzl:
    61. Domain for 5qzm:
    62. Domain for 5qzn:
    63. Domain for 5qzo:
    64. Domain for 5qzp:
    65. Domain for 5qzq:
    66. Domain for 5qzr:
    67. Domain for 5qzs:
    68. Domain for 5qzt:
    69. Domain for 5qzu:
    70. Domain for 5qzv:
    71. Domain for 5qzw:
    72. Domain for 5qzx:
    73. Domain for 5qzy:
    74. Domain for 5qzz:
    75. Domain for 5r00:
    76. Domain for 5r01:
    77. Domain for 5r02:
    78. Domain for 5r03:
    79. Domain for 5r04:
    80. Domain for 5r05:
    81. Domain for 5r06:
    82. Domain for 5r07:
    83. Domain for 5r08:
    84. Domain for 5r09:
    85. Domain for 5r0a:
    86. Domain for 5r0b:
    87. Domain for 5r0c:
    88. Domain for 5r0d:
    89. Domain for 5r0e:
    90. Domain for 5r0f:
    91. Domain for 5r0g:
    92. Domain for 5r0h:
    93. Domain for 5r0i:
    94. Domain for 5r0j:
    95. Domain for 5r0k:
    96. Domain for 5r0l:
    97. Domain for 5r0m:
    98. Domain for 5r0n:
    99. Domain for 5r0o:
    100. Domain for 5r0p:
    101. Domain for 5r0q:
    102. Domain for 5r0r:
    103. Domain for 5r0s:
    104. Domain for 5r0t:
    105. Domain for 5r0u:
    106. Domain for 5r0v:
    107. Domain for 5r0w:
    108. Domain for 5r0x:
    109. Domain for 5r0y:
    110. Domain for 5r0z:
    111. Domain for 5r10:
    112. Domain for 5r11:
    113. Domain for 5r12:
    114. Domain for 5r13:
    115. Domain for 5r14:
    116. Domain for 5r15:
    117. Domain for 5r16:
    118. Domain for 5r17:
    119. Domain for 5r18:
    120. Domain for 5r19:
    121. Domain for 5r1a:
    122. Domain for 5r1b:
    123. Domain for 5r1c:
    124. Domain for 5r1d:
    125. Domain for 5r1e:
    126. Domain for 5r1f:
    127. Domain for 5r1g:
    128. Domain for 5r1h:
    129. Domain for 5r1i:
    130. Domain for 5r1j:
    131. Domain for 5r1k:
    132. Domain for 5r1l:
    133. Domain for 5r1m:
    134. Domain for 5r1n:
    135. Domain for 5r1o:
    136. Domain for 5r1p:
    137. Domain for 5r1q:
    138. Domain for 5r1s:
  3. Human (Homo sapiens) [TaxId:9606] [159640] (13 PDB entries)
    Uniprot Q6P2Q9 1760-2016! Uniprot Q6P2Q9 1771-1989
    1. Domain for 3e9l:
    2. Domains for 3enb:
      1. Domain d3enba1: 3enb A:1771-1989 [158189]
      2. Domain d3enbb_: 3enb B: [158190]
        automated match to d3enba1
    3. Domains for 4jk7:
      1. Domain d4jk7a_: 4jk7 A: [223852]
        automated match to d3enba1
        complexed with cl, gol, mg
      2. Domain d4jk7b_: 4jk7 B: [223853]
        automated match to d3enba1
        complexed with cl, gol, mg
    4. Domains for 4jk8:
      1. Domain d4jk8a_: 4jk8 A: [223854]
        automated match to d3enba1
        complexed with cl, gol, mg
      2. Domain d4jk8b_: 4jk8 B: [223855]
        automated match to d3enba1
        complexed with cl, gol, mg
    5. Domains for 4jk9:
      1. Domain d4jk9a_: 4jk9 A: [223856]
        automated match to d3enba1
        complexed with cl, co, gol
      2. Domain d4jk9b_: 4jk9 B: [223857]
        automated match to d3enba1
        complexed with cl, co, gol
    6. Domains for 4jka:
      1. Domain d4jkaa_: 4jka A: [223858]
        automated match to d3enba1
        complexed with cl, co
      2. Domain d4jkab_: 4jka B: [223859]
        automated match to d3enba1
        complexed with cl, co
    7. Domains for 4jkb:
      1. Domain d4jkba_: 4jkb A: [223860]
        automated match to d3enba1
        complexed with cl, gol, mg
      2. Domain d4jkbb_: 4jkb B: [223861]
        automated match to d3enba1
        complexed with cl, gol, mg
    8. Domains for 4jkc:
      1. Domain d4jkca_: 4jkc A: [223862]
        automated match to d3enba1
        complexed with cl, gol, mg
      2. Domain d4jkcb_: 4jkc B: [223863]
        automated match to d3enba1
        complexed with cl, gol, mg
    9. Domains for 4jkd:
      1. Domain d4jkda_: 4jkd A: [223864]
        automated match to d3enba1
        complexed with cl, mg
      2. Domain d4jkdb_: 4jkd B: [223865]
        automated match to d3enba1
        complexed with cl, mg
    10. Domains for 4jke:
      1. Domain d4jkea_: 4jke A: [223866]
        automated match to d3enba1
        complexed with mg
      2. Domain d4jkeb_: 4jke B: [223867]
        automated match to d3enba1
        complexed with mg
    11. Domains for 4jkf:
      1. Domain d4jkfa_: 4jkf A: [223868]
        automated match to d3enba1
        complexed with mg
      2. Domain d4jkfb_: 4jkf B: [223869]
        automated match to d3enba1
        complexed with mg
    12. Domains for 4jkg:
      1. Domain d4jkga_: 4jkg A: [223870]
        automated match to d3enba1
        complexed with mg
      2. Domain d4jkgb_: 4jkg B: [223871]
        automated match to d3enba1
        complexed with mg
    13. Domains for 4jkh:
      1. Domain d4jkha_: 4jkh A: [223872]
        automated match to d3enba1
        complexed with cl, gol, mg
      2. Domain d4jkhb_: 4jkh B: [223873]
        automated match to d3enba1
        complexed with cl, gol, mg
  4. Schizosaccharomyces pombe 972h- [TaxId:284812] [346311] (1 PDB entry)

More info for Protein Pre-mRNA splicing factor 8, Prp8 / Spp42 from c.55.3.14: Prp8 beta-finger domain-like

Timeline for Protein Pre-mRNA splicing factor 8, Prp8 / Spp42 from c.55.3.14: Prp8 beta-finger domain-like: