SCOPe 2.07: Protein: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP

Lineage for Protein: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
possible rudiment form of Rossmann-fold domain
Superfamily c.30.1: PreATP-grasp domain [52440] (10 families)
precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function
Family c.30.1.8: PurP N-terminal domain-like [159526] (1 protein)
Pfam PF06849; DUF1246
Protein 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP [159527] (3 species)

Species:

Methanocaldococcus jannaschii [TaxId:2190] [159530] (4 PDB entries)
Uniprot Q57600 1-123
1. Domain for 2r7k:
  - Domain d2r7ka1: 2r7k A:1-123 [151647]
    Other proteins in same PDB: d2r7ka2
    complexed with acp, amz, cl, so4
2. Domain for 2r7l:
  - Domain d2r7la1: 2r7l A:1-123 [151649]
    Other proteins in same PDB: d2r7la2
    automated match to d2r7ka1
    complexed with amz, atp, cl, so4
3. Domain for 2r7m:
  - Domain d2r7ma1: 2r7m A:1-123 [151651]
    Other proteins in same PDB: d2r7ma2
    automated match to d2r7ka1
    complexed with amp, cl, so4
4. Domain for 2r7n:
  - Domain d2r7na1: 2r7n A:1-123 [151653]
    Other proteins in same PDB: d2r7na2
    automated match to d2r7ka1
    complexed with adp, cl, fai, so4
Pyrococcus furiosus [TaxId:2261] [159528] (4 PDB entries)
Uniprot Q8U0R7 1-99
1. Domains for 2r84:
  1. Domain d2r84a1: 2r84 A:1-99 [151672]
    Other proteins in same PDB: d2r84a2, d2r84b2
    complexed with amp, amz, cl, mpd, na
  2. Domain d2r84b1: 2r84 B:1-99 [151674]
    Other proteins in same PDB: d2r84a2, d2r84b2
    automated match to d2r84a1
    complexed with amp, amz, cl, mpd, na
2. Domains for 2r85:
  1. Domain d2r85a1: 2r85 A:1-99 [151676]
    Other proteins in same PDB: d2r85a2, d2r85b2
    automated match to d2r84a1
    complexed with amp, cl, mpd, na
  2. Domain d2r85b1: 2r85 B:1-99 [151678]
    Other proteins in same PDB: d2r85a2, d2r85b2
    automated match to d2r84a1
    complexed with amp, cl, mpd, na
3. Domains for 2r86:
  1. Domain d2r86a1: 2r86 A:1-99 [151680]
    Other proteins in same PDB: d2r86a2, d2r86b2
    automated match to d2r84a1
    complexed with atp, mpd, na, po4
  2. Domain d2r86b1: 2r86 B:1-99 [151682]
    Other proteins in same PDB: d2r86a2, d2r86b2
    automated match to d2r84a1
    complexed with atp, mpd, na, po4
4. Domains for 2r87:
  1. Domain d2r87a1: 2r87 A:1-99 [151684]
    Other proteins in same PDB: d2r87a2, d2r87b2, d2r87c2, d2r87d2, d2r87e2, d2r87f2
    automated match to d2r84a1
    complexed with adp, po4
  2. Domain d2r87b1: 2r87 B:1-99 [151686]
    Other proteins in same PDB: d2r87a2, d2r87b2, d2r87c2, d2r87d2, d2r87e2, d2r87f2
    automated match to d2r84a1
    complexed with adp, po4
  3. Domain d2r87c1: 2r87 C:1-99 [151688]
    Other proteins in same PDB: d2r87a2, d2r87b2, d2r87c2, d2r87d2, d2r87e2, d2r87f2
    automated match to d2r84a1
    complexed with adp, po4
  4. Domain d2r87d1: 2r87 D:1-99 [151690]
    Other proteins in same PDB: d2r87a2, d2r87b2, d2r87c2, d2r87d2, d2r87e2, d2r87f2
    automated match to d2r84a1
    complexed with adp, po4
  5. Domain d2r87e1: 2r87 E:1-99 [151692]
    Other proteins in same PDB: d2r87a2, d2r87b2, d2r87c2, d2r87d2, d2r87e2, d2r87f2
    automated match to d2r84a1
    complexed with adp, po4
  6. Domain d2r87f1: 2r87 F:1-99 [151694]
    Other proteins in same PDB: d2r87a2, d2r87b2, d2r87c2, d2r87d2, d2r87e2, d2r87f2
    automated match to d2r84a1
    complexed with adp, po4
Thermococcus kodakaraensis [TaxId:311400] [159529] (1 PDB entry)
Uniprot Q5JD28 2-97
- Domains for 2pbz:
  1. Domain d2pbza1: 2pbz A:4-99 [149371]
    Other proteins in same PDB: d2pbza2, d2pbzb2, d2pbzc2
    complexed with atp
  2. Domain d2pbzb1: 2pbz B:4-99 [149373]
    Other proteins in same PDB: d2pbza2, d2pbzb2, d2pbzc2
    automated match to d2pbza1
    complexed with atp
  3. Domain d2pbzc1: 2pbz C:4-99 [149375]
    Other proteins in same PDB: d2pbza2, d2pbzb2, d2pbzc2
    automated match to d2pbza1
    complexed with atp

More info for Protein 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP from c.30.1.8: PurP N-terminal domain-like

Timeline for Protein 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP from c.30.1.8: PurP N-terminal domain-like:

Protein 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP from c.30.1.8: PurP N-terminal domain-like first appeared in SCOP 1.75
Protein 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP from c.30.1.8: PurP N-terminal domain-like appears in SCOPe 2.06
Protein 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP from c.30.1.8: PurP N-terminal domain-like appears in the current release, SCOPe 2.08