SCOPe 2.08: Protein: NADH-nitrite reductase small subunit NirD

Lineage for Protein: NADH-nitrite reductase small subunit NirD

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.33: ISP domain [50021] (1 superfamily)
consists of two all-beta subdomains: conserved small domain has a rubredoxin-like fold; larger domain consists of 6 beta-stands packed in either sandwich of two 3-stranded sheets or closed barrel (n=6; S=8)

Superfamily b.33.1: ISP domain [50022] (4 families)
Family b.33.1.3: NirD-like [158991] (1 protein)
retains the common fold but lacks the Fe-S cluster
automatically mapped to Pfam PF13806
Protein NADH-nitrite reductase small subunit NirD [158992] (3 species)

Species:

Erwinia carotovora [TaxId:554] [158994] (1 PDB entry)
Uniprot Q6CZS1 1-122
- Domain for 2jza:
  - Domain d2jzaa1: 2jza A:1-122 [148246]
    Other proteins in same PDB: d2jzaa2
Escherichia coli [TaxId:562] [158993] (1 PDB entry)
Uniprot P0A9I8 1-108
- Domain for 2jo6:
  - Domain d2jo6a1: 2jo6 A:1-108 [148154]
    Other proteins in same PDB: d2jo6a2
Vibrio parahaemolyticus [TaxId:670] [158995] (1 PDB entry)
Uniprot Q87HB1 4-111
- Domains for 3c0d:
  1. Domain d3c0da1: 3c0d A:4-111 [155819]
    Other proteins in same PDB: d3c0da2
  2. Domain d3c0db_: 3c0d B: [155820]
    Other proteins in same PDB: d3c0da2
    automated match to d3c0da1
  3. Domain d3c0dc_: 3c0d C: [155821]
    Other proteins in same PDB: d3c0da2
    automated match to d3c0da1
  4. Domain d3c0dd_: 3c0d D: [155822]
    Other proteins in same PDB: d3c0da2
    automated match to d3c0da1
  5. Domain d3c0de_: 3c0d E: [155823]
    Other proteins in same PDB: d3c0da2
    automated match to d3c0da1
  6. Domain d3c0df_: 3c0d F: [155824]
    Other proteins in same PDB: d3c0da2
    automated match to d3c0da1
  7. Domain d3c0dg_: 3c0d G: [155825]
    Other proteins in same PDB: d3c0da2
    automated match to d3c0da1
  8. Domain d3c0dh_: 3c0d H: [155826]
    Other proteins in same PDB: d3c0da2
    automated match to d3c0da1

More info for Protein NADH-nitrite reductase small subunit NirD from b.33.1.3: NirD-like

Timeline for Protein NADH-nitrite reductase small subunit NirD from b.33.1.3: NirD-like:

Protein NADH-nitrite reductase small subunit NirD from b.33.1.3: NirD-like first appeared in SCOP 1.75
Protein NADH-nitrite reductase small subunit NirD from b.33.1.3: NirD-like appears in SCOPe 2.07