Lineage for Species: Escherichia coli [TaxId: 562]

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)
  6. 782637Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 782710Species Escherichia coli [TaxId:562] [158860] (3 PDB entries)

PDB entries in Species: Escherichia coli [TaxId: 562]:

  1. Domain(s) for 2r9h:
    1. 782717Domain d2r9hd1: 2r9h D:1-105 [151784]
      Other proteins in same PDB: d2r9hd2, d2r9hf2
      automatically matched to d1dqdl1
      complexed with cl; mutant
    2. 782718Domain d2r9hf1: 2r9h F:1-105 [151786]
      Other proteins in same PDB: d2r9hd2, d2r9hf2
      automatically matched to d1dqdl1
      complexed with cl; mutant
  2. Domain(s) for 2v7n:
    1. 782711Domain d2v7na1: 2v7n A:1-148 [152724]
      Other proteins in same PDB: d2v7na2, d2v7nc2, d2v7ne2, d2v7ng2
      automatically matched to d1rhha1
    2. 782712Domain d2v7nc1: 2v7n C:1-148 [152726]
      Other proteins in same PDB: d2v7na2, d2v7nc2, d2v7ne2, d2v7ng2
      automatically matched to d1rhha1
    3. 782713Domain d2v7ne1: 2v7n E:1-148 [152728]
      Other proteins in same PDB: d2v7na2, d2v7nc2, d2v7ne2, d2v7ng2
      automatically matched to d1rhha1
    4. 782714Domain d2v7ng1: 2v7n G:1-148 [152730]
      Other proteins in same PDB: d2v7na2, d2v7nc2, d2v7ne2, d2v7ng2
      automatically matched to d1rhha1
  3. Domain(s) for 3det:
    1. 782715Domain d3detd1: 3det D:1-105 [157596]
      Other proteins in same PDB: d3detd2, d3detf2
      automatically matched to d1dqdl1
      mutant
    2. 782716Domain d3detf1: 3det F:1-105 [157598]
      Other proteins in same PDB: d3detd2, d3detf2
      automatically matched to d1dqdl1
      mutant

More info for Species Escherichia coli [TaxId:562] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Escherichia coli [TaxId:562] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa:

  • Species Escherichia coli [TaxId:562] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa is new in SCOP 1.75
  • Species Escherichia coli [TaxId:562] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa last appears in SCOPe 2.01