SCOPe 2.04: Domain d3dwkd1: 3dwk D:73-292

Lineage for d3dwkd1 (3dwk D:73-292)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.2: Lysozyme-like [53954] (1 superfamily)
   common alpha+beta motif for the active site region

4. Superfamily d.2.1: Lysozyme-like [53955] (12 families)

5. Family d.2.1.10: PBP transglycosylase domain-like [159832] (3 proteins)
   Pfam PF00912; lacking the characteristic beta-sheet; otherwise has a similar fold to the Family 19 glycosidase

6. Protein Penicillin-binding protein 2, PBP2 [159835] (1 species)

7. Species Staphylococcus aureus [TaxId:1280] [159836] (3 PDB entries)
   Uniprot Q2YY56 67-292

8. Domain d3dwkd1: 3dwk D:73-292 [157919]
   Other proteins in same PDB: d3dwka2, d3dwkb2, d3dwkc2, d3dwkd2
   automated match to d2olva1
   complexed with lda, so4

Details for d3dwkd1

PDB Entry: 3dwk, 3.1 Å

PDB Description: identification of dynamic structural motifs involved in peptidoglycan glycosyltransfer

PDB Compounds: (D:) Penicillin-binding protein 2

SCOPe Domain Sequences for d3dwkd1:

Sequence, based on SEQRES records:

>d3dwkd1 d.2.1.10 (D:73-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
ipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldykrlfga
igknltggfgsegastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskddifqvyl
nkiyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaaedrknt
vlylmhyhkritdkqwedakkidlkanlvnrtpeerqnid

Sequence, based on observed residues (ATOM records):

>d3dwkd1 d.2.1.10 (D:73-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
ipakiydkngelvktldrhehvnlkdvpksmkdavlatednrfyehgaldykrlfastlt
qqvvkdaflsqhksigrkaqeaylsyrleqeyskddifqvylnkiyysdgvtgikaaaky
yfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaaedrkntvlylmhyhkritdkqwed
akkidlkanlvnrtpeerqnid

Timeline for d3dwkd1:

• d3dwkd1 first appeared in SCOP 1.75
  
• d3dwkd1 appears in SCOPe 2.03
  
• d3dwkd1 appears in SCOPe 2.05
  
• d3dwkd1 appears in the current release, SCOPe 2.08