Lineage for d3dvnx_ (3dvn X:)

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1402144Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 1402145Superfamily d.15.1: Ubiquitin-like [54236] (9 families) (S)
  5. 1402146Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 1402319Protein Ubiquitin [54238] (7 species)
  7. 1402386Species Human (Homo sapiens) [TaxId:9606] [54239] (99 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 1402538Domain d3dvnx_: 3dvn X: [157904]
    Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
    automated match to d1aara_

Details for d3dvnx_

PDB Entry: 3dvn (more details), 2.7 Å

PDB Description: Crystal structure of K63-specific fab Apu2.16 bound to K63-linked di-ubiquitin
PDB Compounds: (X:) Ubiquitin D77

SCOPe Domain Sequences for d3dvnx_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3dvnx_ d.15.1.1 (X:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrl

SCOPe Domain Coordinates for d3dvnx_:

Click to download the PDB-style file with coordinates for d3dvnx_.
(The format of our PDB-style files is described here.)

Timeline for d3dvnx_: