Lineage for d3dvnx1 (3dvn X:1-73)

  1. Root: SCOP 1.75
  2. 849709Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 853596Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 853597Superfamily d.15.1: Ubiquitin-like [54236] (8 families) (S)
  5. 853598Family d.15.1.1: Ubiquitin-related [54237] (38 proteins)
    Pfam PF00240
  6. 853734Protein Ubiquitin [54238] (3 species)
  7. 853743Species Human (Homo sapiens) [TaxId:9606] [54239] (63 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 853808Domain d3dvnx1: 3dvn X:1-73 [157904]
    Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
    automatically matched to d1aara_
    mutant

Details for d3dvnx1

PDB Entry: 3dvn (more details), 2.7 Å

PDB Description: Crystal structure of K63-specific fab Apu2.16 bound to K63-linked di-ubiquitin
PDB Compounds: (X:) Ubiquitin D77

SCOP Domain Sequences for d3dvnx1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3dvnx1 d.15.1.1 (X:1-73) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl

SCOP Domain Coordinates for d3dvnx1:

Click to download the PDB-style file with coordinates for d3dvnx1.
(The format of our PDB-style files is described here.)

Timeline for d3dvnx1: