Lineage for d3dvnu_ (3dvn U:)

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1892544Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 1892545Superfamily d.15.1: Ubiquitin-like [54236] (9 families) (S)
  5. 1892546Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 1892778Protein Ubiquitin [54238] (7 species)
  7. 1892856Species Human (Homo sapiens) [TaxId:9606] [54239] (149 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 1893036Domain d3dvnu_: 3dvn U: [157902]
    Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
    automated match to d1aara_

Details for d3dvnu_

PDB Entry: 3dvn (more details), 2.7 Å

PDB Description: Crystal structure of K63-specific fab Apu2.16 bound to K63-linked di-ubiquitin
PDB Compounds: (U:) Ubiquitin D77

SCOPe Domain Sequences for d3dvnu_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3dvnu_ d.15.1.1 (U:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrl

SCOPe Domain Coordinates for d3dvnu_:

Click to download the PDB-style file with coordinates for d3dvnu_.
(The format of our PDB-style files is described here.)

Timeline for d3dvnu_: