SCOPe 2.07: Domain d3dsxb_: 3dsx B:

Lineage for d3dsxb_ (3dsx B:)

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
   multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

4. Superfamily a.102.4: Terpenoid cyclases/Protein prenyltransferases [48239] (5 families)

5. Family a.102.4.3: Protein prenyltransferases [48246] (3 proteins)

6. Protein Rab geranylgeranyltransferase, beta subunit [48249] (2 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [48250] (21 PDB entries)

8. Domain d3dsxb_: 3dsx B: [157846]
   automated match to d1dceb_
   complexed with ca, ger, zn

Details for d3dsxb_

PDB Entry: 3dsx, 2.1 Å

PDB Description: crystal structure of rabggtase(delta lrr; delta ig)in complex with di- prenylated peptide ser-cys(gg)-ser-cys(gg) derivated from rab7

PDB Compounds: (B:) Geranylgeranyl transferase type-2 subunit beta

SCOPe Domain Sequences for d3dsxb_:

Sequence, based on SEQRES records:

>d3dsxb_ a.102.4.3 (B:) Rab geranylgeranyltransferase, beta subunit {Norway rat (Rattus norvegicus) [TaxId: 10116]}
qkdvtiksdapdtlllekhadyiasygskkddyeycmseylrmsgvywgltvmdlmgqlh
rmnkeeilvfikscqhecggvsasighdphllytlsavqiltlydsihvinvdkvvayvq
slqkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscmnfdggfgcr
pgseshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpeklpdvcysww
vlaslkiigrlhwidreklrsfilacqdeetggfadrpgdmvdpfhtlfgiaglsllgee
qikpvspvfcmpeevlqrvnvqpelvs

Sequence, based on observed residues (ATOM records):

>d3dsxb_ a.102.4.3 (B:) Rab geranylgeranyltransferase, beta subunit {Norway rat (Rattus norvegicus) [TaxId: 10116]}
qkdvtiksdapdtlllekhadyiasygskdyeycmseylrmsgvywgltvmdlmgqlhrm
nkeeilvfikscqhecggvsasighdphllytlsavqiltlydsihvinvdkvvayvqsl
qkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscmnfdggfgcrpg
seshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpeklpdvcyswwvl
aslkiigrlhwidreklrsfilacqdeetggfadrpgdmvdpfhtlfgiaglsllgeeqi
kpvspvfcmpeevlqrvnvqpelvs

Timeline for d3dsxb_:

• d3dsxb_ first appeared in SCOP 1.75, called d3dsxb1
  
• d3dsxb_ appears in SCOPe 2.06
  
• d3dsxb_ appears in the current release, SCOPe 2.08