Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily) consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest |
Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) Similar in architecture to the superfamily I but partly differs in topology |
Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins) has additional insertions and/or extensions that are not grouped together |
Protein Nickel-binding periplasmic protein NikA [102694] (2 species) similar domain organization to oligo- and dipeptide-binding protein |
Species Escherichia coli [TaxId:562] [102695] (28 PDB entries) |
Domain d3dp8b_: 3dp8 B: [157822] automated match to d1zlqa1 complexed with act, cl, gol, hct, ni, so4 has additional subdomain(s) that are not in the common domain |
PDB Entry: 3dp8 (more details), 2.5 Å
SCOPe Domain Sequences for d3dp8b_:
Sequence, based on SEQRES records: (download)
>d3dp8b_ c.94.1.1 (B:) Nickel-binding periplasmic protein NikA {Escherichia coli [TaxId: 562]} pdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedgkt wtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqitl ksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvrne nywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayhtql sqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpyan lglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeiiqa dmrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfqaq qgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpelgn ipyapiateipfeqikpv
>d3dp8b_ c.94.1.1 (B:) Nickel-binding periplasmic protein NikA {Escherichia coli [TaxId: 562]} pdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedgkt wtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqitl ksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvrne nywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayhtql sqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpyan lglkpqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeiiqad mrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfqaqq gladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpelgni pyapiateipfeqikpv
Timeline for d3dp8b_: