Lineage for d3dllu1 (3dll U:8-79)

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1689159Fold d.325: L28p-like [143799] (1 superfamily)
    unusual fold consisting of three beta-hairpins, that form a paper clip-like structure, and two helices; could have evolved from a glucocorticoid receptor-like zinc finger domain (57715)
  4. 1689160Superfamily d.325.1: L28p-like [143800] (2 families) (S)
    In early ribosomal structures, L28p has been misinterpreted as L31p. in the Ribosomal protein L28p family, there are sequences containing two CxxC pairs. Threading these sequences into this fold brings the four cysteines in a similar site to the zinc-binding site of glucocorticoid receptor-like zinc fingers. In the Ribosomal protein L31p, there are also members with two CxxC pairs. However, these won't form a putative zinc-binding site in this fold. The L31p family are classified here temporarily, until its true fold is known
  5. 1689161Family d.325.1.1: Ribosomal protein L28 [143801] (1 protein)
  6. 1689162Protein Ribosomal protein L28 (L28p) [143802] (4 species)
  7. 1689163Species Deinococcus radiodurans [TaxId:1299] [160708] (5 PDB entries)
    Uniprot Q9RRG8 8-79
  8. 1689168Domain d3dllu1: 3dll U:8-79 [157798]
    Other proteins in same PDB: d3dll11, d3dll21, d3dll31, d3dll41, d3dllb1, d3dllc1, d3dlld1, d3dlle1, d3dlle2, d3dllg1, d3dllh1, d3dlli1, d3dllj1, d3dllk1, d3dlll1, d3dllm1, d3dlln1, d3dllo1, d3dllp1, d3dllq1, d3dllr1, d3dlls1, d3dllt1, d3dllv1, d3dllw1, d3dlly1
    automatically matched to 2ZJR U:8-79
    complexed with mg, zld, zn

Details for d3dllu1

PDB Entry: 3dll (more details), 3.5 Å

PDB Description: the oxazolidinone antibiotics perturb the ribosomal peptidyl- transferase center and effect trna positioning
PDB Compounds: (U:) 50S ribosomal protein L28

SCOPe Domain Sequences for d3dllu1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3dllu1 d.325.1.1 (U:8-79) Ribosomal protein L28 (L28p) {Deinococcus radiodurans [TaxId: 1299]}
tgkknlvvnsvirrgkaradggvgrkttgitkrvqranlhkkairengqvktvwlsanal
rtlskgpykgie

SCOPe Domain Coordinates for d3dllu1:

Click to download the PDB-style file with coordinates for d3dllu1.
(The format of our PDB-style files is described here.)

Timeline for d3dllu1: