Lineage for d3d5fa_ (3d5f A:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008476Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2008477Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2008478Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 protein domains)
  6. 2009403Protein automated matches [190059] (14 species)
    not a true protein
  7. 2009425Species Human (Homo sapiens) [TaxId:9606] [187214] (173 PDB entries)
  8. 2009600Domain d3d5fa_: 3d5f A: [157397]
    automated match to d1gwxa_
    protein/DNA complex; complexed with l41

Details for d3d5fa_

PDB Entry: 3d5f (more details), 2.2 Å

PDB Description: Crystal Structure of PPAR-delta complex
PDB Compounds: (A:) Peroxisome proliferator-activated receptor delta

SCOPe Domain Sequences for d3d5fa_:

Sequence, based on SEQRES records: (download)

>d3d5fa_ a.123.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lkafskhiynaylknfnmtkkkarsiltgkashtapfvihdietlwqaekglvwkqlvng
lppykeisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifaml
asivnkdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaa
iilcgdrpglmnvprveaiqdtilralefhlqanhpdaqqlfpkllqkmadlrqlvteha
qmmqrikktetetslhpllqeiykdm

Sequence, based on observed residues (ATOM records): (download)

>d3d5fa_ a.123.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lkafskhiynaylknfnmtkkkarsiltgpfvihdietlwqaekglvwlppykeisvhvf
yrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifamlasivnkdgllva
ngsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaaiilcgdrpglmn
vprveaiqdtilralefhlqanhpdaqqlfpkllqkmadlrqlvtehaqmmqrikktete
tslhpllqeiykdm

SCOPe Domain Coordinates for d3d5fa_:

Click to download the PDB-style file with coordinates for d3d5fa_.
(The format of our PDB-style files is described here.)

Timeline for d3d5fa_: