SCOPe 2.08: Domain d3d5fa_: 3d5f A:

Lineage for d3d5fa_ (3d5f A:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
   multihelical; 3 layers or orthogonally packed helices

4. Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families)

5. Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)

6. Protein automated matches [190059] (14 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187214] (171 PDB entries)

8. Domain d3d5fa_: 3d5f A: [157397]
   automated match to d1gwxa_
   protein/DNA complex; complexed with l41

Details for d3d5fa_

PDB Entry: 3d5f, 2.2 Å

PDB Description: crystal structure of ppar-delta complex

PDB Compounds: (A:) Peroxisome proliferator-activated receptor delta

SCOPe Domain Sequences for d3d5fa_:

Sequence, based on SEQRES records:

>d3d5fa_ a.123.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lkafskhiynaylknfnmtkkkarsiltgkashtapfvihdietlwqaekglvwkqlvng
lppykeisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifaml
asivnkdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaa
iilcgdrpglmnvprveaiqdtilralefhlqanhpdaqqlfpkllqkmadlrqlvteha
qmmqrikktetetslhpllqeiykdm

Sequence, based on observed residues (ATOM records):

>d3d5fa_ a.123.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lkafskhiynaylknfnmtkkkarsiltgpfvihdietlwqaekglvwlppykeisvhvf
yrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifamlasivnkdgllva
ngsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaaiilcgdrpglmn
vprveaiqdtilralefhlqanhpdaqqlfpkllqkmadlrqlvtehaqmmqrikktete
tslhpllqeiykdm

Timeline for d3d5fa_:

• d3d5fa_ first appeared in SCOP 1.75, called d3d5fa1
  
• d3d5fa_ appears in SCOPe 2.07