SCOPe 2.06: Domain d3cuef1: 3cue F:4-169

Lineage for d3cuef1 (3cue F:4-169)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.8: G proteins [52592] (79 proteins)
   core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest

6. Protein Rab11a [102362] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [159558] (2 PDB entries)

8. Domain d3cuef1: 3cue F:4-169 [156989]
   automatically matched to d1yzna1
   complexed with plm

Details for d3cuef1

PDB Entry: 3cue, 3.7 Å

PDB Description: Crystal structure of a TRAPP subassembly activating the Rab Ypt1p

PDB Compounds: (F:) GTP-binding protein YPT1

SCOPe Domain Sequences for d3cuef1:

Sequence, based on SEQRES records:

>d3cuef1 c.37.1.8 (F:4-169) Rab11a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
eydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklqiwd
tagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvgnkc
dlkdkrvveydvakefadankmpfletsaldstnvedafltmarqi

Sequence, based on observed residues (ATOM records):

>d3cuef1 c.37.1.8 (F:4-169) Rab11a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
eydylfklllignsgvgksclllrfsddyistigvdfkiktveldgktvklqiwdtagqe
rfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvgnkcdlkdk
rvveydvakefadankmpfletsaldstnvedafltmarqi

Timeline for d3cuef1:

• d3cuef1 first appeared in SCOP 1.75
  
• d3cuef1 appears in SCOPe 2.05
  
• d3cuef1 appears in SCOPe 2.07
  
• d3cuef1 appears in the current release, SCOPe 2.08