SCOPe 2.07: Domain d3cqza1: 3cqz A:6-1450

Lineage for d3cqza1 (3cqz A:6-1450)

1. Root: SCOPe 2.07

2. Class i: Low resolution protein structures [58117] (25 folds)

3. Fold i.8: RNA polymerase [58180] (1 superfamily)

4. Superfamily i.8.1: RNA polymerase [58181] (1 family)

5. Family i.8.1.1: RNA polymerase [58182] (2 proteins)

6. Protein Complete 12-subunit RNA polymerase II complex [90261] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [90262] (23 PDB entries)

8. Domain d3cqza1: 3cqz A:6-1450 [156929]
   Other proteins in same PDB: d3cqzb_, d3cqzf1, d3cqzh_, d3cqzj_, d3cqzk_, d3cqzl1
   automatically matched to d1wcma_
   protein/DNA complex; protein/RNA complex; complexed with zn

Details for d3cqza1

PDB Entry: 3cqz, 2.8 Å

PDB Description: Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin

PDB Compounds: (A:) DNA-directed RNA polymerase II subunit RPB1

SCOPe Domain Sequences for d3cqza1:

Sequence, based on SEQRES records:

>d3cqza1 i.8.1.1 (A:6-1450) Complete 12-subunit RNA polymerase II complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
yssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnl
kcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqa
laikdskkrfaaiwtlcktkmvcetdvpseddptqlvsrggcgntqptirkdglklvgsw
kkdratgdadepelrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvpppp
vrpsisfnesqrgeddltfkladilkanisletlehngaphhaieeaesllqfhvatymd
ndiagqpqalqksgrpvksirarlkgkegrirgnlmgkrvdfsartvisgdpnleldqvg
vpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiq
lqygwkverhimdndpvlfnrqpslhkmsmmahrvkvipystfrlnlsvtspynadfdgd
emnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldq
vlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngm
liidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstg
igdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflnea
rdkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlp
hfskddyspeskgfvensylrgltpqefffhamggreglidtavktaetgyiqrrlvkal
edimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntd
htldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiq
naqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsr
latrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlntfh
fagvaskkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlks
vtiaseiyydpdprstvipedeeiiqlhfslldeeaeqsfdqqspwllrleldraamndk
dltmgqvgerikqtfkndlfviwsedndekliircrvvrpksldaeteaeedhmlkkien
tmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidpt
riytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvt
rhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmi
deesl

Sequence, based on observed residues (ATOM records):

>d3cqza1 i.8.1.1 (A:6-1450) Complete 12-subunit RNA polymerase II complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
yssaplrtvkevqfglfspeevraisvakirfpetakigglndprlgsidrnlkcqtcqe
gmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdsk
krfaaiwtlcktkmvcetdvpseddptqlvsrggcgntqptirkdglklvgswkkepelr
vlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrptfkladilkani
sletlehngaphhaieeaesllqfhvatymdfsartvisgdpnleldqvgvpksiaktlt
ypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverh
imdndpvlfnrqpslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqse
etraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpd
wdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifg
vvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgpt
mreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaev
nlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspe
skgfvensylrgltpqefffhamggreglidtavktaetgyiqrrlvkaledimvhydnt
trnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpslles
gseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidh
tkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqey
rltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlntfhfagvaskkvt
sgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyyd
pdprstvipedeeiiqlhfslldqqspwllrleldraamndkdltmgqvgerikqtfknd
lfviwsedndekliircrvveaeedhmlkkientmlenitlrgveniervvmmkydrkvp
sptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykev
ynviasdgsyvnyrhmallvdvmttqggltsvtrhgmrcsfeetveilfeagasaelddc
rgvsenvilgqmapigtgafdvmideesl

Timeline for d3cqza1:

• d3cqza1 first appeared in SCOP 1.75
  
• d3cqza1 appears in SCOPe 2.06
  
• d3cqza1 appears in the current release, SCOPe 2.08