SCOPe 2.06: Domain d3ckma1: 3ckm A:257-573

Lineage for d3ckma1 (3ckm A:257-573)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.1: L-arabinose binding protein-like [53823] (18 proteins)

6. Protein YraM C-terminal domain [159804] (1 species)

7. Species Haemophilus influenzae [TaxId:727] [159805] (2 PDB entries)
   Uniprot P45299 257-573
   HI1655

8. Domain d3ckma1: 3ckm A:257-573 [156739]
   Other proteins in same PDB: d3ckma2
   complexed with bme, so4

Details for d3ckma1

PDB Entry: 3ckm, 1.35 Å

PDB Description: lpoa (yram) c-domain from haemophilus influenzae, a regulator of pbp1a

PDB Compounds: (A:) yram (hi1655)

SCOPe Domain Sequences for d3ckma1:

Sequence; same for both SEQRES and ATOM records:

>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}
sqiglllplsgdgqilgttiqsgfndakgnstipvqvfdtsmnsvqdiiaqakqagiktl
vgpllkqnldviladpaqiqgmdvlalnatpnsraipqlcyyglspedeaesaankmwnd
gvrnplvampqndlgqrvgnafnvrwqqlagtdaniryynlpadvtyfvqennsnttaly
avasptelaemkgyltnivpnlaiyassrasasatntntdfiaqmngvqfsdipffkdtn
spqyqklakstggeyqlmrlyamgadawllinqfnelrqvpgyrlsgltgilsadtncnv
erdmtwyqyqdgaivpv

Timeline for d3ckma1:

• d3ckma1 first appeared in SCOP 1.75
  
• d3ckma1 appears in SCOPe 2.05
  
• d3ckma1 appears in SCOPe 2.07
  
• d3ckma1 appears in the current release, SCOPe 2.08