SCOPe 2.08: Domain d3ck8a_: 3ck8 A:

Lineage for d3ck8a_ (3ck8 A:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.8: TPR-like [48452] (11 families)

5. Family a.118.8.6: SusD-like [158775] (4 proteins)
   TPR-like structure resides in the N-terminal part; the C-terminal part is structurally unique and is covered by Pfam PF07980

6. Protein Starch utilization system protein SusD [158780] (1 species)

7. Species Bacteroides thetaiotaomicron [TaxId:818] [158781] (5 PDB entries)
   Uniprot Q8A1G2 42-551

8. Domain d3ck8a_: 3ck8 A: [156730]
   automated match to d3ck7a1
   complexed with ca, edo

Details for d3ck8a_

PDB Entry: 3ck8, 2.1 Å

PDB Description: b. thetaiotaomicron susd with beta-cyclodextrin

PDB Compounds: (A:) SusD

SCOPe Domain Sequences for d3ck8a_:

Sequence, based on SEQRES records:

>d3ck8a_ a.118.8.6 (A:) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]}
qtggsfdqqgvfvkgyamlgvtgqkgidgspdldgqdegesgfyrttfncnelptdeclw
awqknqdipqltsiswspssqrtewvyvrlgyditqynffldqtegmtdaetlrqraeir
flralhywyfldlfgkapfkehfsndlpvekkgtelytyiqnelneieadmyeprqapfg
radkaanwllrarlylnagvytgqtdyakaeeyaskvigsayklctnyselfmadndene
namqeiilpirqdgvktrnyggstylvcgtrvagmprmgttngwscifaraamvqkffsn
ledvpmlpadveiptkgldtdeqidafdaehgirtedmikaagddrallysgvgggrrki
qtdaisgftdglsivkwqnyrsdgkpvshatypdtdiplfrlaeayltraeaifrqggda
tgdinelrkranctrkvqtvteqelidewarefylegrrrsdlvrfgmfttnkylwdwkg
gamngtsvasyynkypipvsdinnnrnmsqnegyk

Sequence, based on observed residues (ATOM records):

>d3ck8a_ a.118.8.6 (A:) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]}
qtggsfdqqgvfvkgyamlgvtdegesgfyrttfncnelptdeclwawqknqdipqltsi
swspssqrtewvyvrlgyditqynffldqtegmtdaetlrqraeirflralhywyfldlf
gkapfkehfsndlpvekkgtelytyiqnelneieadmyeprqapfgradkaanwllrarl
ylnagvytgqtdyakaeeyaskvigsayklctnyselfmadndenenamqeiilpirqdg
vktrnyggstylvcgtrvagmprmgttngwscifaraamvqkffsnledvpmlpadveip
tkgldtdeqidafdaehgirtedmikaagddrallysgvgggrrkiqtdaisgftdglsi
vkwqnyrsdgkpvshatypdtdiplfrlaeayltraeaifrqggdatgdinelrkranct
rkvqtvteqelidewarefylegrrrsdlvrfgmfttnkylwdwkggamngtsvasyynk
ypipvsdinnnrnmsqnegyk

Timeline for d3ck8a_:

• d3ck8a_ first appeared in SCOP 1.75, called d3ck8a1
  
• d3ck8a_ appears in SCOPe 2.07