SCOPe 2.08: Domain d3bdmf_: 3bdm F:

Lineage for d3bdmf_ (3bdm F:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
   4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing

4. Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families)
   N-terminal residue provides two catalytic groups, nucleophile and proton donor

5. Family d.153.1.0: automated matches [191393] (1 protein)
   not a true family

6. Protein automated matches [190509] (19 species)
   not a true protein

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226129] (16 PDB entries)

8. Domain d3bdmf_: 3bdm F: [155134]
   Other proteins in same PDB: d3bdm0_, d3bdm1_, d3bdma_, d3bdmb_, d3bdmc2, d3bdmc3, d3bdmd_, d3bdme_, d3bdmg_, d3bdmh_, d3bdmi_, d3bdmj_, d3bdmk_, d3bdml_, d3bdmm_, d3bdmn_, d3bdmo_, d3bdmp_, d3bdmq2, d3bdmq3, d3bdmr_, d3bdms_, d3bdmu_, d3bdmv_, d3bdmw_, d3bdmx_, d3bdmy_, d3bdmz_
   automated match to d1irug_
   complexed with gdt

Details for d3bdmf_

PDB Entry: 3bdm, 2.7 Å

PDB Description: yeast 20S proteasome:glidobactin A-complex

PDB Compounds: (F:) Proteasome component C1

SCOPe Domain Sequences for d3bdmf_:

Sequence; same for both SEQRES and ATOM records:

>d3bdmf_ d.153.1.0 (F:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
gtgydlsnsvfspdgrnfqveyavkavengttsigikcndgvvfaveklitskllvpqkn
vkiqvvdrhigcvysglipdgrhlvnrgreeaasfkklyktpipipafadrlgqyvqaht
lynsvrpfgvstifggvdkngahlymlepsgsywgykgaatgkgrqsakaeleklvdhhp
eglsareavkqaakiiylahednkekdfeleiswcslsetnglhkfvkgdllqeaidfaq
kein

Timeline for d3bdmf_:

• d3bdmf_ first appeared in SCOP 1.75, called d3bdmf1
  
• d3bdmf_ appears in SCOPe 2.07