Lineage for d3bbda1 (3bbd A:2-205)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2492420Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2492421Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2492576Family c.116.1.6: EMG1/NEP1-like [159513] (3 protein domains)
    Pfam PF03587; structurally most similar to the AF1056-like family, but more decorated
  6. 2492581Protein Ribosome biogenesis protein NEP1 [159514] (1 species)
  7. 2492582Species Methanococcus jannaschii [TaxId:2190] [159515] (3 PDB entries)
    Uniprot Q57977 2-205
  8. 2492583Domain d3bbda1: 3bbd A:2-205 [155061]
    protein/RNA complex; complexed with gol, sah

Details for d3bbda1

PDB Entry: 3bbd (more details), 2.15 Å

PDB Description: M. jannaschii Nep1 complexed with S-adenosyl-homocysteine
PDB Compounds: (A:) Ribosome biogenesis protein NEP1-like

SCOPe Domain Sequences for d3bbda1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]}

SCOPe Domain Coordinates for d3bbda1:

Click to download the PDB-style file with coordinates for d3bbda1.
(The format of our PDB-style files is described here.)

Timeline for d3bbda1: