SCOPe 2.01: Domain d3b9xd1: 3b9x D:3-310

Lineage for d3b9xd1 (3b9x D:3-310)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.70: Nucleoside hydrolase [53589] (1 superfamily)
   core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest

4. Superfamily c.70.1: Nucleoside hydrolase [53590] (2 families)

5. Family c.70.1.1: Nucleoside hydrolase [53591] (5 proteins)

6. Protein Pyrimidine nucleoside hydrolase YeiK [102633] (1 species)

7. Species Escherichia coli [TaxId:562] [102634] (4 PDB entries)

8. Domain d3b9xd1: 3b9x D:3-310 [155028]
   automatically matched to d1q8fa_
   complexed with ca, nos, tam

Details for d3b9xd1

PDB Entry: 3b9x, 2.3 Å

PDB Description: Crystal structure of the E. coli pyrimidine nucleoside hydrolase YeiK in complex with inosine

PDB Compounds: (D:) Pyrimidine-specific ribonucleoside hydrolase rihB

SCOPe Domain Sequences for d3b9xd1:

Sequence, based on SEQRES records:

>d3b9xd1 c.70.1.1 (D:3-310) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlv
pvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgv
plvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdat
cigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglv
eecvrgyi

Sequence, based on observed residues (ATOM records):

>d3b9xd1 c.70.1.1 (D:3-310) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivaihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlvpv
gplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgvpl
vmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdatci
gylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglvee
cvrgyi

Timeline for d3b9xd1:

• d3b9xd1 first appeared in SCOP 1.75
  
• d3b9xd1 appears in SCOPe 2.02
  
• d3b9xd1 appears in the current release, SCOPe 2.08, called d3b9xd_