Lineage for d3b2ut1 (3b2u T:1-121)

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 protein domains)
  6. 781740Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 781920Species Human (Homo sapiens), cluster 3 [TaxId:9606] [88547] (33 PDB entries)
    Uniprot Q6N089 20-243 # 95% sequence identity; natural chimera: antibody heavy chain (Fab HYB3)
  8. 781962Domain d3b2ut1: 3b2u T:1-121 [154796]
    Other proteins in same PDB: d3b2ua1, d3b2ua2, d3b2ub1, d3b2ub2, d3b2uc2, d3b2ue1, d3b2ue2, d3b2uf2, d3b2uh2, d3b2ui1, d3b2ui2, d3b2uj2, d3b2um1, d3b2um2, d3b2un2, d3b2up1, d3b2up2, d3b2uq2, d3b2us1, d3b2us2, d3b2ut2, d3b2uv1, d3b2uv2, d3b2uw2
    automatically matched to d1deeb1
    complexed with bma, man, nag, so4

Details for d3b2ut1

PDB Entry: 3b2u (more details), 2.58 Å

PDB Description: crystal structure of isolated domain iii of the extracellular region of the epidermal growth factor receptor in complex with the fab fragment of imc-11f8
PDB Compounds: (T:) IMC-11F8 FAB Heavy chain

SCOP Domain Sequences for d3b2ut1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3b2ut1 b.1.1.1 (T:1-121) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}
qvqlqesgpglvkpsqtlsltctvsggsissgdyywswirqppgkglewigyiyysgstd
ynpslksrvtmsvdtsknqfslkvnsvtaadtavyycarvsifgvgtfdywgqgtlvtvs
s

SCOP Domain Coordinates for d3b2ut1:

Click to download the PDB-style file with coordinates for d3b2ut1.
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Timeline for d3b2ut1: