Lineage for d2zmia_ (2zmi A:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008476Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2008477Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2008478Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 protein domains)
  6. 2009359Protein Vitamin D nuclear receptor [48528] (2 species)
  7. 2009387Species Norway rat (Rattus norvegicus) [TaxId:10116] [101432] (15 PDB entries)
  8. 2009389Domain d2zmia_: 2zmi A: [154691]
    automated match to d1rkha_
    protein/DNA complex; complexed with edo, fmt, tt2

Details for d2zmia_

PDB Entry: 2zmi (more details), 1.7 Å

PDB Description: Crystal Structure of Rat Vitamin D Receptor Bound to Adamantyl Vitamin D Analogs: Structural Basis for Vitamin D Receptor Antagonism and/or Partial Agonism
PDB Compounds: (A:) Vitamin D3 receptor

SCOPe Domain Sequences for d2zmia_:

Sequence, based on SEQRES records: (download)

>d2zmia_ a.123.1.1 (A:) Vitamin D nuclear receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}
rpklseeqqhiiailldahhktydptyadfrdfrppvrmdgstgsvtldlsplsmlphla
dlvsysiqkvigfakmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsq
dykydvtdvskaghtlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdakl
veaiqdrlsntlqtyircrhpppgshqlyakmiqkladlrslneehskqyrslsfqpens
mkltplvlevfgn

Sequence, based on observed residues (ATOM records): (download)

>d2zmia_ a.123.1.1 (A:) Vitamin D nuclear receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}
rpklseeqqhiiailldahhktydptyadfrdfrppvrmsplsmlphladlvsysiqkvi
gfakmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsqdykydvtdvsk
aghtlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdaklveaiqdrlsnt
lqtyircrhpppgshqlyakmiqkladlrslneehskqyrslsfqpensmkltplvlevf
gn

SCOPe Domain Coordinates for d2zmia_:

Click to download the PDB-style file with coordinates for d2zmia_.
(The format of our PDB-style files is described here.)

Timeline for d2zmia_: