Lineage for d2zjpu1 (2zjp U:8-79)

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1449071Fold d.325: L28p-like [143799] (1 superfamily)
    unusual fold consisting of three beta-hairpins, that form a paper clip-like structure, and two helices; could have evolved from a glucocorticoid receptor-like zinc finger domain (57715)
  4. 1449072Superfamily d.325.1: L28p-like [143800] (2 families) (S)
    In early ribosomal structures, L28p has been misinterpreted as L31p. in the Ribosomal protein L28p family, there are sequences containing two CxxC pairs. Threading these sequences into this fold brings the four cysteines in a similar site to the zinc-binding site of glucocorticoid receptor-like zinc fingers. In the Ribosomal protein L31p, there are also members with two CxxC pairs. However, these won't form a putative zinc-binding site in this fold. The L31p family are classified here temporarily, until its true fold is known
  5. 1449073Family d.325.1.1: Ribosomal protein L28 [143801] (1 protein)
  6. 1449074Protein Ribosomal protein L28 (L28p) [143802] (4 species)
  7. 1449075Species Deinococcus radiodurans [TaxId:1299] [160708] (5 PDB entries)
    Uniprot Q9RRG8 8-79
  8. 1449079Domain d2zjpu1: 2zjp U:8-79 [154513]
    Other proteins in same PDB: d2zjp11, d2zjp21, d2zjp31, d2zjp41, d2zjpa1, d2zjpa2, d2zjpb1, d2zjpc1, d2zjpd1, d2zjpe1, d2zjpe2, d2zjpf1, d2zjpf2, d2zjpg1, d2zjph1, d2zjpi1, d2zjpj1, d2zjpk1, d2zjpl1, d2zjpm1, d2zjpn1, d2zjpo1, d2zjpp1, d2zjpq1, d2zjpr1, d2zjps1, d2zjpt1, d2zjpv1, d2zjpw1, d2zjpy1
    automatically matched to 2ZJR U:8-79
    protein/RNA complex; complexed with mg, no1, zn

Details for d2zjpu1

PDB Entry: 2zjp (more details), 3.7 Å

PDB Description: Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
PDB Compounds: (U:) 50S ribosomal protein L28

SCOPe Domain Sequences for d2zjpu1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2zjpu1 d.325.1.1 (U:8-79) Ribosomal protein L28 (L28p) {Deinococcus radiodurans [TaxId: 1299]}
tgkknlvvnsvirrgkaradggvgrkttgitkrvqranlhkkairengqvktvwlsanal
rtlskgpykgie

SCOPe Domain Coordinates for d2zjpu1:

Click to download the PDB-style file with coordinates for d2zjpu1.
(The format of our PDB-style files is described here.)

Timeline for d2zjpu1: